LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu1g3137	ATGGGAAATATCCTGAACGAAGCAGAGCATCCGCTGATACAGTCAACGCTGCCAgagccacaacaacaacacGAATCCAACACTCACTCTCTCTTCCACCGAACATGCTCGGAATCGAAGAAGCTCTGGCACATCGCCGCCCCCTCCATCTTCACCCGCCTCGCCATGTTCTCCATCACCGTCGTCACTCAATCATTCGCCGGCCACCTCGGCGACCTCGACCTCGCCGCCATTTCCATCGCTTGCACCGTCCTCATCTCCATCACCTTCGGTTTCTTGCTGGGAATGGCGAGTGCGTTGGAGACACTTTGTGGCCAAGCCTACGGCGCGGGACAGCACCGCATGTTGGGCGTTTATTTGCAACGTTCCTGGGTTGTTTTGTTCCTGTCTTCGATTCTGATGTTGCCGATGTTCGTGTTTGCGACGCCCGTGTTGAAGTTGATAGGGCAGCCGGTTGCGGTGGCGGAGCAGGCGGGGTTGGTGGCGGTTTGGTTGATTCCGTTTCACCTGAGCTTCCCGTTTCAGTTCACGTTGCAGCGGTTCCTGCAGTGCCAGTTGAAGACTGGCATCATAGCTTGGGTTTCAGGGGCAGCTCTTGCGATTCATGTTTTAGTGAGTTGggtttttgtttataaaatgagaattggCATCGTTGGCACTGCACTTTCTATTGGTTTCTCGTGGTGGCTCTCGGTTTTGGGAATGCTCCGGTATGCACTGTTTGGTGGGTGCCCACATTCGTGGACGGGTTTTTCTGCTGAAGCTTTTGTTGGCCTTTGGGAATTCTTCAAACTCGCTTTGGCTTCTGGGGTCATGCTTGCGTTAGAGAACTTCTATTACAGACTGTTGCTTATAGTGTCTGGGTATATGCATAACACTGAGATTGCGATTGATGCTCTTTCCGTTTGTGTGACTATTTATGGTTGGGAATCCATGATACCGCTTGCATTTTTGGGTGCAACCGGGGTGCGTGTAGCAAACGAGCTTGGTGCAGGCAACGCAAAAGGCGCAAAATTTGCAACTGTGGTTTCTGTGGTAAATACTGTACTGGTGGGATTTATATTTTGGTTGATAATTGTGTCCTTCAACAAGGAGCTTGCCTTGATCTTTACATCGAGCTCGTCTGTTATCCAAATGGTCAATGAACTGGCAATGTTGTTAGCTTTTACTATTCTTCTTAATTGCATTCAACCAGTTCTTTCAGGGGTGGCAGTTGGTTCTGGCCGTCAAGCAGTTGTGGCTTATATAAACATTGGCAGTTACTACTTGGTTGGAATACCTCTTGGGGTTCTCCTAGGCTGGTTGCTACCTTCGGGTATTATTGGTATGTGGACCGGAATGATGAGTGGAACGGTGGTTCAAACATTGATCTTGACTATTATTACGATGAAATATGATTGGGAAAAAGAGGTATGCTTTACAACGCGTAGCATTTTGGCACGGAATGGAatggttttAGGCGGTGCGGATAAGGCGATGGGTAGCTTGAAGAGAGACAATGAACATGCCAATAATCTTACCGAAGCCCTCTTGGCAACGACAGAGGCACCCGTTCATGCACAACAAGAAGATCAAATCAAGGAGGAACAAGGATTTGGTGACAAACTCTGGCTTGAAACCAAGAAGCTATGGCTCATTGTGGGCCCCTCTATCTTCAGTCGCATTGCAGCGTTCACCATGAACGTTGTTACCCAAGCCTTCGCCGGTCACTTGGGTGATGTTGAACTCGCTGCCATTTCTATTGCCAACACCGTTATCGTTGGCTTCAATTTCGGCCTCCTATTGGGGATGGCGAGCGCGTTGGAGACACTGTGCGGGCAAGCATTTGGGGCAAAGAGATACCACATGTTGGGTATATACATGCAGCGGTCTTGGATTGTTTTGTTCTTGTGTTGTTTCCTGTTGTTGCCGTTTTATGTTTTCGCCACTCCGCTTCTTAAATTCCTAGGACAGCCAGATGACGTGGCAGAGTGGAGCGGAATTGTGGCCGTGTGGCTCATTCCTCTGCACTTCAGTTTTGCGTTTCAGTTTCCTTTGCAAAGATTCCTGCAGTGCCAGCTCAAGACCGCTGTTATTGCTTGGGTTTCCTTGCTGGGCTTGGTTGTTAATGTGGTCACCAGTTGGCTCTTGATTTATGTGTGGGATTTTGGACTTTATGGTGCGGCTATTTCTTTGGATATTTCCTGGTGGATTCTGGTGTTTGGCATGTATGCTTACACTGCCTATGGTGGATGCCCTTTAACTTGGACTGGTTTCTCCGTTGAAGCCTTTTCTGGACTCTGGGAATTCCTCCAGCTCTCTACCGCTTCTGGCGTCATGTTATGCTTAGAGAACTGGTACTACAGGATATTGGTACTTATGACTGGCCAGTTGGAGAATGCCACTATCGCCGTTGATGCCTTGTCTGTCTGTATGACCATCAACGGGTGGGAAATGATGATTCCCCTGGCTTTCTTCGCCGGTACTGGgGTAAGGGTGGCGAACGAGCTAGGCGCAGGCAATGGGAAAGCAGCAAAATTTGCAACGCAAGTATCAGTGGTACAATCAACGGTTATTGGGCTCATCTTTTGTGTTCTGATAACGATATTCCGTGACTATGTTGCATACATATTCACCACAAGCTCTTCCGTCCTTCAAGCCGTTGACCATATGGCATTCCTCTTAGCTGTCACTATTCTTCTCAACAGTATTCAACCCGTTTTGTCagtcttcagggaaaaagatccgttgaggaagacttga	2742	0.4712	MGNILNEAEHPLIQSTLPEPQQQHESNTHSLFHRTCSESKKLWHIAAPSIFTRLAMFSITVVTQSFAGHLGDLDLAAISIACTVLISITFGFLLGMASALETLCGQAYGAGQHRMLGVYLQRSWVVLFLSSILMLPMFVFATPVLKLIGQPVAVAEQAGLVAVWLIPFHLSFPFQFTLQRFLQCQLKTGIIAWVSGAALAIHVLVSWVFVYKMRIGIVGTALSIGFSWWLSVLGMLRYALFGGCPHSWTGFSAEAFVGLWEFFKLALASGVMLALENFYYRLLLIVSGYMHNTEIAIDALSVCVTIYGWESMIPLAFLGATGVRVANELGAGNAKGAKFATVVSVVNTVLVGFIFWLIIVSFNKELALIFTSSSSVIQMVNELAMLLAFTILLNCIQPVLSGVAVGSGRQAVVAYINIGSYYLVGIPLGVLLGWLLPSGIIGMWTGMMSGTVVQTLILTIITMKYDWEKEVCFTTRSILARNGMVLGGADKAMGSLKRDNEHANNLTEALLATTEAPVHAQQEDQIKEEQGFGDKLWLETKKLWLIVGPSIFSRIAAFTMNVVTQAFAGHLGDVELAAISIANTVIVGFNFGLLLGMASALETLCGQAFGAKRYHMLGIYMQRSWIVLFLCCFLLLPFYVFATPLLKFLGQPDDVAEWSGIVAVWLIPLHFSFAFQFPLQRFLQCQLKTAVIAWVSLLGLVVNVVTSWLLIYVWDFGLYGAAISLDISWWILVFGMYAYTAYGGCPLTWTGFSVEAFSGLWEFLQLSTASGVMLCLENWYYRILVLMTGQLENATIAVDALSVCMTINGWEMMIPLAFFAGTGVRVANELGAGNGKAAKFATQVSVVQSTVIGLIFCVLITIFRDYVAYIFTTSSSVLQAVDHMAFLLAVTILLNSIQPVLSVFREKDPLRKT	913

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu1g3137	913	PANTHER	MULTIDRUG RESISTANCE PROTEIN	16	473	-	-
	Ssu1g3137	913	TIGRFAM	matE: MATE efflux family protein	48	444	IPR002528	GO:0015297\|GO:0016020\|GO:0042910\|GO:0055085
	Ssu1g3137	913	TIGRFAM	matE: MATE efflux family protein	549	902	IPR002528	GO:0015297\|GO:0016020\|GO:0042910\|GO:0055085
	Ssu1g3137	913	CDD	MATE_eukaryotic	38	473	IPR045069	GO:0042910\|GO:1990961
	Ssu1g3137	913	Pfam	MatE	771	904	IPR002528	GO:0015297\|GO:0016020\|GO:0042910\|GO:0055085
	Ssu1g3137	913	Pfam	MatE	270	430	IPR002528	GO:0015297\|GO:0016020\|GO:0042910\|GO:0055085
	Ssu1g3137	913	Pfam	MatE	48	208	IPR002528	GO:0015297\|GO:0016020\|GO:0042910\|GO:0055085
	Ssu1g3137	913	Pfam	MatE	549	709	IPR002528	GO:0015297\|GO:0016020\|GO:0042910\|GO:0055085
	Ssu1g3137	913	PANTHER	MULTIDRUG RESISTANCE PROTEIN	516	902	-	-
	Ssu1g3137	913	CDD	MATE_eukaryotic	539	902	IPR045069	GO:0042910\|GO:1990961
	Ssu1g3137	913	PANTHER	PROTEIN DETOXIFICATION	16	473	-	-
	Ssu1g3137	913	PANTHER	PROTEIN DETOXIFICATION	516	902	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu1g3137	Ssu-Chr1	82075179	82133520	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu1g3137	K03327		-	gmx:100814869	839.336

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu1g3137	1	82075179	82133520	Ssu1g3137	1	82075179	82133520	ECH