Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3123 ATGCTCCATCAGCTATCACTTTGCGGTTCAAAAATCGCCACTCAACCCACGCTCTTCGCTTCGGTTGTTTCCGGCGGAAACAACGCCGGACATTGTTCATTTGCCGGAAATTCGTCCGTCCGTGACGTGAGGTTGAAGTTCATGAAGCAAGCGTCGGGAAGCAAATTGAACAATGAACATGTAGTTTTTAGCGAGACAATGGATCGTGCCAAGCATGGGACAACTAATGCTTATCGTGGTCGACCTCAAGAAGGGGTTCTTGAgGAAGAATCCTCCAAAGTGATAGAGAGCAGACCATCATGGAAAATTTTTCCAGGCCAGGCATTTCCATTGGGTGTATCAGAAGTTGATAGTGGCATCAACTTTGCTATTTTTTCACAACATGCAACTGCTGTCACACTTTGTTTAGTCCTTCCTGAGAGgGGAAATATTGACGCATTGGATGGTGGCTTAATAGAAATGGTTTTGGATCCTGATTTGAACAAAACTGGGGACATTTGGCACATATGTATTGAGGATCTTCCTCGAAGCAATGTTCTGTATGGATATCGCATAGATGGACCTCAAGACTGGGGTAAGGGGCATCGATTTGACAGCAGCATTGTGCTTGTTGATCCTTATGCAAAACTAGTTGAAGGTAGAAGATATTTTGGGGATATTAGCATGAAGTTGTCAAAGTTTCTTGGCACATATGATTTTGACAGCTTGCCTTTCGACTGGGGAGAAAATTACAAGCTTCCAAATATTTCTGAGAAAGATCTTGTTATATATGAGATGAATGTGCGTGCATTTACAATTGATGAATCTAGTGGTTTGGATAGCAACATTCGTGGCAGCTACCTTGGTGTGATTGAAAAGATTCCACACCTTCTAGAGCTTGGTATCAATGCAGTAGAGTTGCTGCCTGTCTTCGAGTTTGATGAGTTAGAATTCCAGAGGCGTCCAAATCCCAGATGTCATATGATTAATACATGGGGTTATTCAACAATAAATTTCTTTGCTCCTATGAGTCGCTATGCTAGTGCTGGTGGAGGATCAGTTAATGCTTCCCGAGAGTTCAAGCAAATGGTTAAAGCCTTACATTCTACTGGTATAGAgGTTATTTTGGATGTTGTTTACAATCATACTAATGAGGCTGATGATGCCAATCCTTACACTACTTCATTTCGTGGCATAGATAAtaagGTTTATTACATGCTGGACGAAAATGGGCAATTGCTGAACTTCTCTGGCTGcgGAAATACATTGAATTGTAACCATCCCGTGGTCATGGAGCTAATTCTTGACAGCCTAAGACACTGGGTGACTGAATATCATGTGAATGGATTTCGATTTGATCTTGCGAGTGTCCTGTGTCGAGGAAGTGATGGCTCTCCCCTTAATGCCCCCCCACTTATTAGgGCAATTGCTAAAGATGCAGTACTATCAAGATGTAAAATTATTGCAGAGCCCTGGGACTGTGGAGGTCTCTATCTTGTTGGGAGTTTTCCAAATTGGGATcgGTGGGCTGAATGGAATGGGAAATATCGCGATGATGTACGGAAATTTATTAAGGGTGATTCTGATGTGAAGGGGAGCTTTGCAACTCGTGTTGCTGGGTCTTCTGATCTTTACAGAGTGAACAAGCGTAGGCCATATCATAGTATTAACTTTGTTATCGCACATGACGGATTCACCTTGCGTGATCTtgtttcatacaatttcaagCACAATGAAGCCAATGGGGAAGGTGGAAATGATGGAAgcaatgataattttagttggAATTGTGGTTTCGAAGGGGAAACCGATGATGCTAGTATAAGAGCTTTGCGGTCACGGCAAATGAAAAACTTCCATTTGGCATTAATGATATCTCAGGGTACTCCAATGATGCTAATGGGGGATGAATATGGCCATACTCGCAATGGAAATAACAATAGTTATGGGCATGATACcgccattaataattttttgtgggATCAGTTGGATGCACGGAAGAGCGATCACTTCAGGTTTTTCTCGAAGGTGATAAAGTACCGGCATGCACATGAAGTATTCAGTCATGAAAGTTTTCTCAGCAAGAATGACATAACATGGCATGAAGACAATTGGAACAATCAAGACAGCAAATTTCTTGCATTCACGCTTCATGACAAGAGCGGGGGAGATATCTATTTGGCATTTAATGCTCACGATTACTTTGTCAAAGTTCTGATTCCCACACCTCCAAAAAAGAGGAAGTGGTTCCGTGTGGTGGACACTAATTTCGGATCTCCGGATGACTTTGTCCTTGATGGTGTCCCTAGCATAGGAAACACGTACAATATAGCTCCGTACTCCTCCATTCTTCTTGAGGCGAAGTTTTGA 2349 0.4117 MLHQLSLCGSKIATQPTLFASVVSGGNNAGHCSFAGNSSVRDVRLKFMKQASGSKLNNEHVVFSETMDRAKHGTTNAYRGRPQEGVLEEESSKVIESRPSWKIFPGQAFPLGVSEVDSGINFAIFSQHATAVTLCLVLPERGNIDALDGGLIEMVLDPDLNKTGDIWHICIEDLPRSNVLYGYRIDGPQDWGKGHRFDSSIVLVDPYAKLVEGRRYFGDISMKLSKFLGTYDFDSLPFDWGENYKLPNISEKDLVIYEMNVRAFTIDESSGLDSNIRGSYLGVIEKIPHLLELGINAVELLPVFEFDELEFQRRPNPRCHMINTWGYSTINFFAPMSRYASAGGGSVNASREFKQMVKALHSTGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMLDENGQLLNFSGCGNTLNCNHPVVMELILDSLRHWVTEYHVNGFRFDLASVLCRGSDGSPLNAPPLIRAIAKDAVLSRCKIIAEPWDCGGLYLVGSFPNWDRWAEWNGKYRDDVRKFIKGDSDVKGSFATRVAGSSDLYRVNKRRPYHSINFVIAHDGFTLRDLVSYNFKHNEANGEGGNDGSNDNFSWNCGFEGETDDASIRALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRNGNNNSYGHDTAINNFLWDQLDARKSDHFRFFSKVIKYRHAHEVFSHESFLSKNDITWHEDNWNNQDSKFLAFTLHDKSGGDIYLAFNAHDYFVKVLIPTPPKKRKWFRVVDTNFGSPDDFVLDGVPSIGNTYNIAPYSSILLEAKF 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3123 782 SUPERFAMILY E set domains 105 242 IPR014756 -
Ssu1g3123 782 SMART aamy 258 665 IPR006047 GO:0005975
Ssu1g3123 782 Pfam Alpha amylase, catalytic domain 279 395 IPR006047 GO:0005975
Ssu1g3123 782 SUPERFAMILY (Trans)glycosidases 237 681 IPR017853 -
Ssu1g3123 782 Gene3D Glycosidases 234 688 - -
Ssu1g3123 782 CDD E_set_GDE_Isoamylase_N 109 258 IPR044505 -
Ssu1g3123 782 Gene3D Immunoglobulins 90 228 IPR013783 -
Ssu1g3123 782 Gene3D - 689 782 IPR013780 -
Ssu1g3123 782 CDD AmyAc_Glg_debranch 238 677 - -
Ssu1g3123 782 PANTHER GLYCOGEN DEBRANCHING ENZYME 84 780 - -
Ssu1g3123 782 SUPERFAMILY Glycosyl hydrolase domain 688 781 - -
Ssu1g3123 782 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 110 208 IPR004193 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3123 Ssu-Chr1 81785624 81804594 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3123 81 781 Glycoside Hydrolase AT4G09020 77.066 0.0 1161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3123 K01214 - gmx:100806342 1476.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3123 1 81785624 81804594 Ssu1g3123 1 81785624 81804594 ECH