Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3122 ATGTTTCGAGGGATGAGCGTGGAGGCTCCCATGAGTTGGTGTTTGTGtttgaaaccaaaaacaaaagcaaaaattacaaataaggTGCGACCGCCACACCCTCGCAGCCGCCAAGGATATACTAGTACTATTACTAGTGTGATCCGCACTGCTTCCGAGACAAACGCGATGGCGCTTACTTTTGAGGTTCTTGGCAGATTCAACCGTGCTCGTGCTGCTCGGTTGACACTCCCTCATTTTGTGTGCCAAACTCCTTTGTTTATGCCCGTGGGCACACAAGGAACAATAAAGGGGTTGACAAATAGCCAGCTTGAGGATATTGGTTGCCAAATAATACTTGGAAATACATATCACTTGGCCCTGCGACCTACTTCTGAGCTTCTTGATGAAGTTGGTGGTCttcataattttatgaattgGCCACGGGCACTGCTTACAGACTCTGGTGGCTTTCAAATGGTTTCGCTGTTGCATCTTGCTGATATCACAGAAAAAGGCGTGACATttcagTCACCAGTAGATGGAAAACCAATGCTTCTAACACCTGAGGAATCAATTCAAATCCAAAATAGAATTGGAGCAGATATCATTATGGCTCTTGACGATGTTGTAAAGACCACCATTACTGGTCCACGAATTGAGGAAGCTATGTATCGAACAATTAGATGGATAGATAGATGTATAGCAGCTCACAAGAGACCTCATGATCAGAACTTGTTTGGTATTGTGCAAGGTGGTTTAGATCCTGTATTGAGGGATATCTGTGTCAAAGGTATGGTGGAGCGCAATTTGCCTGGCTATGCTATTGGTGGTCTTTCAGGCGGTGAAGATAAAAGTTCATTTTGGCAGGTTGTTGCTCAGTGCACTGCTGCTTTGCCAGAGGATAAACCACGATATGTTATGGGAGTTGGTTATCCACTTGATATCGTTGTTTGTAGTGCTTTGGGTGCTGACATGTATGACTGTGTGTATCCTACCCGTACAGCACGCTTTGGCACTGCTCTCGTTCCTGAGGGAGTATTGAAACTAAAACACAGAGAAATGGCTGACGACACTCGTCCAATTGATCCTACTTGCCCTTGTATGGTTTGCAAGAACTACACCAGGGCTTACATCCATTGCCTTGTGACAAAAGATGCAATGGGGTCTCAACTTTTGTCGTATCATAATTTATACTACATGATGCAGCTCAGTAGGAATCTACACTCTTCAATAGTTGAAGGAAGGTTCCCAGAGTTTGTATGTGGCTTTCTACACAAAATGTTCCCTAAAGGTGATGTTCCTGAATGGGTCTGCGATGCTATGGAGGTGGCTGGAATTGACATTTCTTCCTGCTGTGCTCCGTTTTCATCTGGCAAAGAATATGATTCCAAAAATATGCCTGAAGAAGTTAGTTTAGTGAGGTAA 1407 0.4279 MFRGMSVEAPMSWCLCLKPKTKAKITNKVRPPHPRSRQGYTSTITSVIRTASETNAMALTFEVLGRFNRARAARLTLPHFVCQTPLFMPVGTQGTIKGLTNSQLEDIGCQIILGNTYHLALRPTSELLDEVGGLHNFMNWPRALLTDSGGFQMVSLLHLADITEKGVTFQSPVDGKPMLLTPEESIQIQNRIGADIIMALDDVVKTTITGPRIEEAMYRTIRWIDRCIAAHKRPHDQNLFGIVQGGLDPVLRDICVKGMVERNLPGYAIGGLSGGEDKSSFWQVVAQCTAALPEDKPRYVMGVGYPLDIVVCSALGADMYDCVYPTRTARFGTALVPEGVLKLKHREMADDTRPIDPTCPCMVCKNYTRAYIHCLVTKDAMGSQLLSYHNLYYMMQLSRNLHSSIVEGRFPEFVCGFLHKMFPKGDVPEWVCDAMEVAGIDISSCCAPFSSGKEYDSKNMPEEVSLVR 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3122 468 TIGRFAM Q_tRNA_tgt: tRNA-guanine transglycosylase 61 421 IPR004803 GO:0008479|GO:0101030
Ssu1g3122 468 SUPERFAMILY tRNA-guanine transglycosylase 57 419 IPR036511 GO:0006400|GO:0016763
Ssu1g3122 468 Gene3D - 56 422 IPR036511 GO:0006400|GO:0016763
Ssu1g3122 468 TIGRFAM tgt_general: tRNA-guanine family transglycosylase 61 421 IPR002616 GO:0006400|GO:0016763
Ssu1g3122 468 Pfam Queuine tRNA-ribosyltransferase 69 421 IPR002616 GO:0006400|GO:0016763
Ssu1g3122 468 Hamap Queuine tRNA-ribosyltransferase [tgt]. 59 420 IPR004803 GO:0008479|GO:0101030
Ssu1g3122 468 PANTHER QUEUINE TRNA-RIBOSYLTRANSFERASE CATALYTIC SUBUNIT 1 54 445 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3122 K00777 - gmx:100819664 895.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3122 1 81766315 81775985 Ssu1g3122 1 81766315 81775985 ECH