Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3116 AtgcacaaacaaaaacaaaagaatcaacCAGAGGTATTGGCGGAAAAATATAGATCGAAAGTGGGGGTTTGTGGCTTTCTCACTAGTTGCGAAGCTGGCGCAAACAAGAGCAAGGAACTAAGGAGGGTGGATCACGAGCTGCGAAGGCGGAGCTGGGTAGGTGGGCCGCAAGTCGTGGAGGCGCAAGCGCAGCAGAACCTGCAGCATCAGCCGCCGGTGTACAACATCAACAAGAACGACTTCAGGGATGTGGTTCAAAAACTGACGGGCTCACCTGCGCACGACCGCATCTCCACACCCCCTCCCATTCAGCAACCCAAACCCCCGAGCTCGCGCCTCCAGCGGATTCGCCCTCCCCCCTTGCCGCAAATTACGAACCGCCCAACCCCGCTCCTCAACCCCACCATACCCCGCCCTCAGCAACTCCCCAACGCCGTTAACTTCAATAACTTCTCCGTCTTTGCAAGACCCCCCGCGCCGTTATCTCCTCTGCCGCCGTTCCCCGCCGTGCACGCGCCTGCCGAGTCCCCTATCTCCGCTTACATGCGCGATCTGCAGAATCTCGTCGATTCGAACGCCAAGCACTTCTCCGGGTTTTCGCCCCTAGCGCCTCCGCCTCAGGCTCAGGTTCAGCAAGAACAACATCAATCGCAGCAGCAAGGGATGGCTCCGTCGTCGCAGTCGCCGTTTCAAATGCCGTCTTCGCCTGTGCCTTTCGGGTGTTTGAATTCGCAGCTGGCGTCTTACCCTTTGCTATCGCCGGGGCTTCTGTTTTCCCCAACCTCGGGTCAGTTAGGGTTTCCGCAGCTTCCGCTTTCGCCCACCGTGCCGGTTCCTAGCCCTCGATGGAGAGGGATTTGA 861 0.5738 MHKQKQKNQPEVLAEKYRSKVGVCGFLTSCEAGANKSKELRRVDHELRRRSWVGGPQVVEAQAQQNLQHQPPVYNINKNDFRDVVQKLTGSPAHDRISTPPPIQQPKPPSSRLQRIRPPPLPQITNRPTPLLNPTIPRPQQLPNAVNFNNFSVFARPPAPLSPLPPFPAVHAPAESPISAYMRDLQNLVDSNAKHFSGFSPLAPPPQAQVQQEQHQSQQQGMAPSSQSPFQMPSSPVPFGCLNSQLASYPLLSPGLLFSPTSGQLGFPQLPLSPTVPVPSPRWRGI 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3116 286 MobiDBLite consensus disorder prediction 99 129 - -
Ssu1g3116 286 MobiDBLite consensus disorder prediction 204 234 - -
Ssu1g3116 286 Pfam VQ motif 69 95 IPR008889 -
Ssu1g3116 286 MobiDBLite consensus disorder prediction 195 234 - -
Ssu1g3116 286 PANTHER VQ MOTIF-CONTAINING PROTEIN 9 56 285 IPR039824 GO:1901001
Ssu1g3116 286 MobiDBLite consensus disorder prediction 91 129 - -
Ssu1g3116 286 PANTHER PROTEIN HAIKU1 56 285 IPR039612 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3116 Ssu-Chr1 81612344 81617816 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3116 - - gmx:100777442 325.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3116 1 81612344 81617816 Ssu1g3116 1 81612344 81617816 ECH