Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3106 ATGGCTTGGCGCTTCTTCTCCTTCCTCCCCAACATCAAATCCTCTAAAACCCTAAATCCTAATCGCGATCCCTTCTCCTCCACAGCCCCATTTTCCACCTCCTTCCTGGTCACCAAAACCCCCAAAAAGCTGAAGAAAAAACGCAAGCCCAAAGCCAGCCCGCGAACCAACCCGGTCCAAACCGAACCGAGCCGCATCCCCGAACTGGAACGCATTCTGCACCGCGACGCCCTCCTGCGCTTCGTGACGCGGTCGAAGCAATTCCTCTCCGCCCAGCCGGAGCACGTCCTCCGCCTCGACGACGCCGGCAAGCTCCACCGCGAGCTCGGCTTCCCGCGCGGCCGGAAGGTCTCGCGCTTCCTCCAGCGCCACCCCCTCCTCTTCGAGACCTACCGCCACGCGGACGGCAAGACGTGGCTGGGCTTCACCGACCTCATGGAGGACCTCCTCGCAGAGGAACAGTCCCTCATGGACTCCGTGGAGCTCGACCGCGTCGAGAAGGTTCGGAAGCTGCTCATGATGTCCGCGCGCAACCGCATCCCCCTCAGCAAGATCCACCACTGCAGGGCCCTGTTCGGCATCCCGGACGATTTCCGCGACAGGGTTTGTAAGTACCCCAATTATTTCAGAATTGTGGTTGAGAGCGACGGGAAGAGGGTGCTCGAGTTGGCGAATTGGGACCCTCTTCTGGCCGTGAGTGCGCTCGAGAGGGAGTTCGTGGTTGACGAGGATGGCGCTAAGAGGAAGTTTAGGTTTCCTGTGAAGTATGCGAGGAAGGGTTTGGGTTTGGAATTGCGTGATGCGAGGAAGCTTGATTTGTTGAACGCGCTTCCTTTGGTGTCTCCCTACTCGGACGGGTCCAAGTTGGACGGGTGGACGTTGGAGGCGGAGAAGTATAGGGTTGGGGTGATTCATGAGTTCTTGAGCTTGACGTTGGAGAAGAGGGCGTCTATTCATCACCTTGTGGAGTTTAAGGAGGAGTTTAGTTTGACTAAGCATACTTATCATATGCTGCGGAAGCAGCCCCGAGCGTTTTACTTGGCCGGAACTGAGATGAATTGGGCTGTGTTCTTGAAGGATGCGTATGATCGGAATGGGGTTTTGGTTGAGAAGGACCCCCAGGTGGTTTTTAACGAGAAGCTTTTTAAGTATGCTCAGGTGGACCAAATGGAACCCGGGTCTGATGATGGGGCGGAAGAGCAACATTTGACTTGA 1215 0.5646 MAWRFFSFLPNIKSSKTLNPNRDPFSSTAPFSTSFLVTKTPKKLKKKRKPKASPRTNPVQTEPSRIPELERILHRDALLRFVTRSKQFLSAQPEHVLRLDDAGKLHRELGFPRGRKVSRFLQRHPLLFETYRHADGKTWLGFTDLMEDLLAEEQSLMDSVELDRVEKVRKLLMMSARNRIPLSKIHHCRALFGIPDDFRDRVCKYPNYFRIVVESDGKRVLELANWDPLLAVSALEREFVVDEDGAKRKFRFPVKYARKGLGLELRDARKLDLLNALPLVSPYSDGSKLDGWTLEAEKYRVGVIHEFLSLTLEKRASIHHLVEFKEEFSLTKHTYHMLRKQPRAFYLAGTEMNWAVFLKDAYDRNGVLVEKDPQVVFNEKLFKYAQVDQMEPGSDDGAEEQHLT 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3106 404 Pfam Plant organelle RNA recognition domain 65 387 IPR021099 GO:0003723
Ssu1g3106 404 MobiDBLite consensus disorder prediction 39 63 - -
Ssu1g3106 404 PANTHER PROTEIN WHAT'S THIS FACTOR 1 HOMOLOG, CHLOROPLASTIC 1 394 IPR045040 GO:0003723
Ssu1g3106 404 PANTHER OS09G0473400 PROTEIN 1 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3106 Ssu-Chr1 81364714 81365928 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3106 - - gmx:100813429 688.337
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3106 1 81364714 81365928 Ssu1g3106 1 81364714 81365928 ECH