Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3104 ATGGCCATGGCGACGCCGGAACCCTCCCCCGACCATATCGACTCTCTCCCGCTCGTCGACCTCCGCCTCCTCTCCCAATCCGAACTCTACACCCTCTCCCTCTCCGGCGACACTCCTCGCCACCGCCACGGCGACGACGATTCCGTAATCCCCAAAATCGACCGTTCCAATTTCAACGAATCCGCCGGCAGCCGCAAGCAGACCTACTCCAAACTCCGCctcaacaaacaaaaacaaaattccgCCGTTCCCGCCTCCTCCTTCCACATTCCTCTCCACATTCCGGAGCCCTTGGACGAAGAAAACTCTCAGATCATCGCTCTGCTGCAACAACTCTTCGGCATCGAGTCTCTTCGCAACGCTCCGCGCCTCAACGATGCGGAGGACCGCCGCCTCGTTCCCGTCCAGGTCGAGTTCAAACAACCGCCTCCGGAATCCGCGACGTTCCAGAACGTTCCGATTGACGTTGTGGATAGCGGCCAGAGGAAGCGGAAGCGTGGGCGGCCGAGGAAGAACGAGAATTCGGTGACGGTTTTCGTGGAGGAGCCGAGGGAGGTTAACGGTCACGGCAACGGCGAGGGTAACGCGGTGGCAGCGGTTAGCGAGACTGGATTTGTGGTTGACGCGGTTCGTTTGGACGGGGATCCGTTTGGGGAGGAGTTGAAGAGAAGGACCCAAGGGTTGGAGACGGAGTCGCAGTTGTTGGAATTTTTGGAGACTATGAATGGAGAATGGGCGAGTCagaggaagaagaggaggatTGTGCCGGCTAGTGACCTTGGTGACTTGTTGCCTGCGGGATGGAAGATCGTAATTACTCTTTTGAGGAGGGCCGGTCGTGGTTCTGTTGTTTGTCGCCGTTACGTAAGTCCTGGTGGACACCAGTTTGACTCGTGCAAAGAAGTTTCTGCATACTTGCATTCTGTTCCTGGTGTTCAAGATAGAATCCATTTAAGATCTAGTTATACTGATGGTGCTCAGCAAATGTCCAGTAGTATGAGCATGGCATCTGAAAGTAGGGTTGGTCATGTCCCTACTGGAGGCATGAAGACTGATGCCAATGCAAGTTATTTGTCTTTAGTTGGTGCATGTGCACACTTTAATCATGAGAAGCAGGCCCCCATATCATCATCAATTGGAAGTGAAAATTTCAATAATGATCTGGCTTTGGGTTGTAAATTAGGAGATGCTACTGGAGACTTTGACCATCAAACTGAAGATAAGGAACTATTGAAGGCTTATAAGAATGATGGAAATTCAGTTCAGGGATGTTCTCTCATGGAGGATAGAGTTTGTAATGTACACAATGAGAATTTGGTTGGTGCTGGTGATGCTGCATGCAATTTTTATATTCCTTTGGTTTTGTCAACGCCTTTCTTCAATAATAATAGTGACAATGGTCAAATTtcagatgaaataaatgttaccACATGCATAAAAGGTGGCATTAGTAATGTTGCTAGTCAGGATAGAAATACTGGATGCTATGAGACTGTTCCTTGTGGAAATGAGCAAGCACATGTTGGCAACAATGGGCTTGGGCTTTCTGTGAAATTAGTGGAAGAGAACATTCagaaaataagttttgaaaGCAGCCTGCTGGCTCCAAATTCTGAGGGGAAAATATTTGCCAGTAAAAATTTAGAGGATAGACATCTTATTAGCTCACTGGAGGATATGGAGATCAGAGATGGAAAGGCCATTAAGAAtgacaaacaacaaattatttgTAGCAGAGACCAGGCTGAAATTAAAGATGTTCCTACTAATATTAAACTGCGGAGTAGTTCTGAGGGTTGTTCTCTTGTCTCATCGCAGGATGAACTTAAACATACATGTATAAGTAATATGGACAGGACACAGACTTCCATGCTGAAGGACTCTGCtgaggaaaatatttttgatagtGATTTATTTAGCTCATCTATTGATGAAAGAATATGTGTTCACAGTGGTTACATCAGTAATATTTCTTTTAGCTCTTGCACACAAGATGCTTCTGAGTATGATGGATTCGATTTTGCTTCTGATCTTAAATTAACTAAGGATGTTAATGATAATCATATTCTTTCAAATGAAGAAGGTGTGACAAGATGTTTTCAGGGAAGGAGTTCCTTGAATGACCAACATAACATGATGGACAATCTGTTGCACAGAAGTTCTCAAAGTAACTTATTTGCTCTAACTGGTAATCAGCACCCTTCTGCTTTTCATGATAATGTGAATAATATCTCTGATGGAACCTTTGATGCACTCAAAGCTGTTGATGCTGGTTGCATGGAGCCTCAGTTAGGCATTGTTTCTTGCAGCAATATTGCTGTTGATGCATATACTACTGCAAGCATTATGCAGGGAAAATCACAAGGATGTGTATCTGTTCCTTTTGGTGGAAGTATATTAAACTTTGAGAAGCAAAGTGATGATGGTGTTAATAAAGCAAATAAATCTTGCTTACCAGAGAAGGCTCAGAATGAAGTTGAAATATTCCAAACTGACTCTATGGGTCTGCCCAAATTTCGGTAG 2523 0.4336 MAMATPEPSPDHIDSLPLVDLRLLSQSELYTLSLSGDTPRHRHGDDDSVIPKIDRSNFNESAGSRKQTYSKLRLNKQKQNSAVPASSFHIPLHIPEPLDEENSQIIALLQQLFGIESLRNAPRLNDAEDRRLVPVQVEFKQPPPESATFQNVPIDVVDSGQRKRKRGRPRKNENSVTVFVEEPREVNGHGNGEGNAVAAVSETGFVVDAVRLDGDPFGEELKRRTQGLETESQLLEFLETMNGEWASQRKKRRIVPASDLGDLLPAGWKIVITLLRRAGRGSVVCRRYVSPGGHQFDSCKEVSAYLHSVPGVQDRIHLRSSYTDGAQQMSSSMSMASESRVGHVPTGGMKTDANASYLSLVGACAHFNHEKQAPISSSIGSENFNNDLALGCKLGDATGDFDHQTEDKELLKAYKNDGNSVQGCSLMEDRVCNVHNENLVGAGDAACNFYIPLVLSTPFFNNNSDNGQISDEINVTTCIKGGISNVASQDRNTGCYETVPCGNEQAHVGNNGLGLSVKLVEENIQKISFESSLLAPNSEGKIFASKNLEDRHLISSLEDMEIRDGKAIKNDKQQIICSRDQAEIKDVPTNIKLRSSSEGCSLVSSQDELKHTCISNMDRTQTSMLKDSAEENIFDSDLFSSSIDERICVHSGYISNISFSSCTQDASEYDGFDFASDLKLTKDVNDNHILSNEEGVTRCFQGRSSLNDQHNMMDNLLHRSSQSNLFALTGNQHPSAFHDNVNNISDGTFDALKAVDAGCMEPQLGIVSCSNIAVDAYTTASIMQGKSQGCVSVPFGGSILNFEKQSDDGVNKANKSCLPEKAQNEVEIFQTDSMGLPKFR 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3104 840 MobiDBLite consensus disorder prediction 38 53 - -
Ssu1g3104 840 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 5 785 - -
Ssu1g3104 840 MobiDBLite consensus disorder prediction 142 174 - -
Ssu1g3104 840 Pfam Methyl-CpG binding domain 263 308 IPR001739 GO:0003677
Ssu1g3104 840 MobiDBLite consensus disorder prediction 34 67 - -
Ssu1g3104 840 ProSiteProfiles Methyl-CpG-binding domain (MBD) profile. 254 327 IPR001739 GO:0003677
Ssu1g3104 840 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 8 5 785 IPR037472 -
Ssu1g3104 840 SUPERFAMILY DNA-binding domain 262 311 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3104 Ssu-Chr1 81314047 81323308 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3104 - - gmx:100780637 1264.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3104 1 81314047 81323308 Ssu1g3104 1 81314047 81323308 ECH