Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3095 ATGGCCGGTGGGGTGTTCCCTGTCGATTCATCACCAATTACCGATGGCTTCCTTGGCAAGATAACGCTCTCAATTGTCATCACTTGCATCGTTGCTGCATCCAGTGGACTTCTTTTTGGATATGACCTCGGAGTTTCAgGAGGTGTCACAACAATGGTACCGTTTCTGAAAAAATTCTTCCCAGATATATTGAGAAAGGCAGCTGGTGCCGAAGTAAATATGTACTGTGTGTATGACAGTCAAGTGTTGACATCGTTCACGTCTTCTCTGTACCTTGCTGGGTTAGTGTCATCTCTCGCAGCTAGCCGAGTCACGGCGGCGTTGGGTCGGAGAAACACCATCCTCTTGGGTGGTGCCGTCTTTCTTGCCGGTGGTGCCATTAATGGAGGTGCTGAAAATATTGCCATGCTCATTTTGGGCCGTGTGCTACTCGGGTTTGGGGTCGGTTTCACTAATCAAGCTGCGCCGTTGTACCTTTCTGAAATCGCCCCACCGAGATGGCGAGGAGCATTCAACACAGGCTTCCAATTCTTCCTAGGAGTAGGAGTGCTTGTCGCAGGCTGCATAAACTTTGTAACCGCGAAGCACACGTGGGGCTGGCGAGTCTCTCTTGGCCTTGCCGTGGTGCCTGCAGCAGTTATGACAGTTGGTGCTTTCCTTATAACTGACACCCCCAGCAGCTTGGTTGAGCGTGGCAAAATAGACCAAGCCAGAAAAGCCTTGCGCAAAGCCAGAGGATCCTCCACCGATGTTGAACCCGAATTGGAAGAACTCGTTAGGTGGTCACAAATTGCAAAATCTATGGAGCAGGAGCCCTTCAAGACCATATTTGAGAGGCAGTATCGACCGCACTTGGTCATGGCATTTGCTATCCCATTTTTTCAACAGCTTACAGGGATTAACATCGTCGCATTTTACTCTCCTAACCTCTTTCAGTCTGTGGGTTTGGGTCATGATGCGGCTTTACTTTCTGCCATTATACTCGGAGCAGTCAACCTTGCTTCTCTCCTCGTCTCCACTGCTATTGTTGATCGATTTGGTCGAAGGTTCTTGTTCATAACTGGTGGCATATGCATGCTTGTTAGTCAGATAGCGGTGTCTGTTGTGCTAGCAGTGGTGACTGGTGTTCATGGTACAAAGGACATATCGAAGGCCAATGCAGTTGTGGTGTTGGTGCTACTTTGTTTCTACACTGCAGGTTTTGGTTGGTCGTGGGGCCCTCTCACCTGGCTAATTCCGAGTGAGATTTTCCCCTTAAAAATCAGAACCACCGGACAAAGCATAGCTGTTGCTGTGCAGTTcataaccatatttatattatccCAGACATTCTTGACAATGCTATGCCACTTCAAGTTTGCCGCCTTCTTGTTCTATGCGGGTTGGATTGTGGTGATGACaatgtttgttatatttttcttgccCGAGACAAAAGGAATTCCTTTGGAGTCAATGTACACCATATGGAGTAAACACTGGTTTTGGCGCCGGTTTGTGAAAGAAGAAGTTTCCATGAACTCAGTATCACTTTAG 1533 0.4697 MAGGVFPVDSSPITDGFLGKITLSIVITCIVAASSGLLFGYDLGVSGGVTTMVPFLKKFFPDILRKAAGAEVNMYCVYDSQVLTSFTSSLYLAGLVSSLAASRVTAALGRRNTILLGGAVFLAGGAINGGAENIAMLILGRVLLGFGVGFTNQAAPLYLSEIAPPRWRGAFNTGFQFFLGVGVLVAGCINFVTAKHTWGWRVSLGLAVVPAAVMTVGAFLITDTPSSLVERGKIDQARKALRKARGSSTDVEPELEELVRWSQIAKSMEQEPFKTIFERQYRPHLVMAFAIPFFQQLTGINIVAFYSPNLFQSVGLGHDAALLSAIILGAVNLASLLVSTAIVDRFGRRFLFITGGICMLVSQIAVSVVLAVVTGVHGTKDISKANAVVVLVLLCFYTAGFGWSWGPLTWLIPSEIFPLKIRTTGQSIAVAVQFITIFILSQTFLTMLCHFKFAAFLFYAGWIVVMTMFVIFFLPETKGIPLESMYTIWSKHWFWRRFVKEEVSMNSVSL 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3095 510 PANTHER MAJOR FACILITATOR, SUGAR TRANSPORTER, MAJOR FACILITATOR SUPERFAMILY-RELATED 3 503 - -
Ssu1g3095 510 SUPERFAMILY MFS general substrate transporter 30 484 IPR036259 -
Ssu1g3095 510 TIGRFAM SP: MFS transporter, sugar porter (SP) family 23 484 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu1g3095 510 ProSiteProfiles Major facilitator superfamily (MFS) profile. 28 478 IPR020846 GO:0022857
Ssu1g3095 510 CDD MFS_STP 31 476 IPR044778 GO:0015145|GO:0015749
Ssu1g3095 510 Pfam Sugar (and other) transporter 29 489 IPR005828 GO:0016021|GO:0022857|GO:0055085
Ssu1g3095 510 ProSitePatterns Sugar transport proteins signature 2. 143 168 IPR005829 GO:0016021|GO:0022857|GO:0055085
Ssu1g3095 510 PANTHER SOLUTE CARRIER FAMILY 2, FACILITATED GLUCOSE TRANSPORTER 3 503 IPR045262 GO:0015144
Ssu1g3095 510 Gene3D MFS general substrate transporter like domains 19 492 IPR036259 -
Ssu1g3095 510 PRINTS Sugar transporter signature 295 305 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu1g3095 510 PRINTS Sugar transporter signature 414 426 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu1g3095 510 PRINTS Sugar transporter signature 138 157 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu1g3095 510 PRINTS Sugar transporter signature 391 412 IPR003663 GO:0016020|GO:0022857|GO:0055085
Ssu1g3095 510 PRINTS Sugar transporter signature 36 46 IPR003663 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3095 Ssu-Chr1 81108156 81113659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3095 52 500 Organic Solute Cotransporters AT1G34580 65.487 0.0 602
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3095 K24193 - gmx:100817162 882.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3095 1 81108156 81113659 Ssu1g3095 1 81108156 81113659 ECH