Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3084 ATGGACCAGTTCAACAACGACGATCTCGAGTACGTCGTCGACGACTACTACGACGTTCCCGACTTCGGAGGCGACCACACCTCCGACATTGTTCCTCAACCAACCTCCGATGTCGACTCTCAGGACTCCGACTTCGAAGACGATTTCCTAACGAGTGATGCGAAGACCGATACCACTGCTTCGGAAGCGAGAAACGGGAAAGACATCCAGGGAATCCCGTGGGAGAGGCTTAATCATAGCAGAGACAAATACCGCGAGATTCGATTGAAGCAGTACAAAAACTACGAGAACCACTCGCGCCCTCGTCACGACCTCCACGAGGAGTGCTTGAAAGGGCAGAAGGGGAAGACTTTCTATGACTTCCACTTCAATACCAGGCTTGTCAAATCGACGATTGTGCATTTTCAGCTGAGGAATTTGTTGTGGGCAACTTCAAAGCATGATGTATACCTTATGCAAAACTACTCAGTGATGCATTGGTCCCCATTACTACGAAGGGGTAAAGAAGTGCTTAACGTAGCCAAACCAATTATTCCAACACTTAAGCGTCCTGGATTTTTAGCTCAGCCTGTCTCCAGAGTGCAAATAAGCACCATGACTGTTAAGGAAAATCTGATGGTGGCGGGTGGTTTCAAGGGTGAGCTTATTTGCAAGAATCTGAAACATCCTGGAGTTTTATTCTGTGGTAAAATAGCTACAGATGATAGTGCCATAACCAATGCTGTGGATGTTTACCGCAATCCAGGTGGGTCGTTGAGGATAATCACAGCTAATAATGATTCCCAAGTTCGGGTTTTTGATGCGGAAAATTTTGCTTCTCTTGGTTGTTTCAAGTATGATTGGTCTGTTAATAATACTTCTGTTAGTCCGGATGGAAAGTTGTTGGCTGTTCTTGGGGACAGTACTGAGTGCTTGATAGCTGATACTAACACTGGAAAGATGACTGGGAGCCTAAAAGGGCACTTGGACTACTCTTTTGCATCGGCTTGGCACCCAGATGGACGAATATTGGCCACTGGGAATCAGGACACAACATGCAGGTTGTGGGACATAAGAAATCTTTCACAATCTATGGCTGTGTTAAAGGGAAGAATGGGAGCAATAAGAGCCTTAAGATTCACATCTGATGGACGGTTTTTAGCAATGGCTGAGCCAGCAGACTTCGTCCATATTTTTGACTCACATTCTGGTTATGTACAAGGTCAGGAGATAGATCTATTTGGCGAGATTGCTGGTATATCCTTTAGCCCAGATACAGAGGCTCTATTTGTGGGTATTGCTGACCGAACCTATGGTAGCTTGTTAGAGTTCATCAGAAAACGTCACAATAATTACCTAGACTCCATGTTTTAA 1353 0.4523 MDQFNNDDLEYVVDDYYDVPDFGGDHTSDIVPQPTSDVDSQDSDFEDDFLTSDAKTDTTASEARNGKDIQGIPWERLNHSRDKYREIRLKQYKNYENHSRPRHDLHEECLKGQKGKTFYDFHFNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNYSVMHWSPLLRRGKEVLNVAKPIIPTLKRPGFLAQPVSRVQISTMTVKENLMVAGGFKGELICKNLKHPGVLFCGKIATDDSAITNAVDVYRNPGGSLRIITANNDSQVRVFDAENFASLGCFKYDWSVNNTSVSPDGKLLAVLGDSTECLIADTNTGKMTGSLKGHLDYSFASAWHPDGRILATGNQDTTCRLWDIRNLSQSMAVLKGRMGAIRALRFTSDGRFLAMAEPADFVHIFDSHSGYVQGQEIDLFGEIAGISFSPDTEALFVGIADRTYGSLLEFIRKRHNNYLDSMF 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3084 450 MobiDBLite consensus disorder prediction 20 67 - -
Ssu1g3084 450 ProSitePatterns Trp-Asp (WD) repeats signature. 337 351 IPR019775 -
Ssu1g3084 450 Pfam WD domain, G-beta repeat 313 350 IPR001680 GO:0005515
Ssu1g3084 450 Gene3D - 235 445 IPR015943 GO:0005515
Ssu1g3084 450 SMART WD40_4 213 267 IPR001680 GO:0005515
Ssu1g3084 450 SMART WD40_4 270 308 IPR001680 GO:0005515
Ssu1g3084 450 SMART WD40_4 311 350 IPR001680 GO:0005515
Ssu1g3084 450 SMART WD40_4 354 393 IPR001680 GO:0005515
Ssu1g3084 450 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 318 353 - -
Ssu1g3084 450 PANTHER WD REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_8G05640)-RELATED 1 450 - -
Ssu1g3084 450 PANTHER OS03G0386000 PROTEIN 1 450 - -
Ssu1g3084 450 SUPERFAMILY WD40 repeat-like 190 430 IPR036322 GO:0005515
Ssu1g3084 450 ProSiteProfiles Trp-Asp (WD) repeats profile. 318 359 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3084 Ssu-Chr1 80631107 80636040 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3084 236 430 Miscellaneous Gene Families AT5G08390 25.510 3.24e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3084 - - gmx:100775453 799.275
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3084 1 80631107 80636040 Ssu1g3084 1 80631107 80636040 ECH