Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3078 ATGGCTGACATTGGGCATCGGAATGGATACGTAAACAGTGTACTACCAAATAGGCACCCTGCTGCAATATCTGAAGTAGATGAATACTGCAAGGCCCTTGGTGGAAACAGGCCAATTCATAGCATATTAATTGCAAACAATGGAATGGCAGCAGTCAAGTTTATACGTAGCGTCAGGAGCTGGGCCTATGAGACATTTGGCTCGGAGAAAGCCATCTTGTTGGTTGCTATGGCTACCCCAGAGGATATGAGAATCAATGCAGAACATATCAGAATAGCTGATCAATTTGTGGAAGTACCTGGTGGGACCAATAACAATAACTATGCCAATGTGCAGCTTATACTTGAGATGGCTGAGATAACTCATGTTGATGCGGTGTGGCCTGGTTGGGGTCATGCATCAGAAAATCCTGAGCTTCCAGATGCATTAAAAGCAAAAGGAATTGTATTTCTTGGACCTCCTGCTATATCTATGGCTGCATTGGGAGATAAAATTGGTTCGTCATTAATTGCTCAAGCAGCGGATGTACCTACCCTTCCATGGAGCGGTTCTCATGTGAAAATTCCGCCTGAAAGTTCCTTGATTACTATTCCTGATGAAATTTATCGGGAAGCGTGTGTTTATACAACGGAGGAAGCAATTGCAAGTTGTCAAGTTGTAGGATACCCTGCGATGATCAAGGCATCTTGGGGTGGTGGTGGTAAAGGCATAAGAAAGGTTCATAATGATGATGAGGTAAGGGCATTGTTCAAGCAAGTTCAAGGTGAAGTTCCGGGTTCacctatttttataatgaagGTTGCATCCCAGAGCCGACATCTAGAAGTCCAGTTACTTTGTGATCAGTATGGAAATGTTGCAGCTTTGCATAGCCGTGATTGTAGTGTTCAAAGAAGGCACCAAAAGATTATTGAGGAGGGTCCCATTACTGTAGCACCCATAGAAACGGTGAAAAAACTGGAACAGGCAGCTAGAAGGTTGGCTAAATCTGTAAATTATGTTGGGGCGGCTACCGTTGAGTATCTTTATAGTATGGAAACTGGCGAGTACTACTTTTTGGAGTTGAACCCCCGGCTACAGGTTGAACATCCTGTTACTGAGTGGATAGCGGAGATAAGTCTGCCAGCAGCACAAGTTGCCATTGGGATGGGTATCCCTCTCTGGCAAATTCCTGAGATGAGACGTTTCTATGGGGTGAAACATAGTGGGGGGAATGATGCTTGGAGAAAAACATCAGTTTTAGCTACCCCTTTTGATTTTGACAAAGCAGAATCTACAAGGCCAAAAGGTCATTGTGTGGCTGTGCGAGTGACTAGTGAGGACCCTGATGATGGTTTTAAGCCTACAAGTGGGAAAGTGCAGGAGCTTAGTTTTAAAAGCAAGCCAAATGTGTGGGCATACTTCTCTGTCAAGTCTGGAGGAGGAATTCATGAATTCTCAGATTCACAATTTGGGCATGTTTTTGCTTTTGGAGAATCTAGGGCTTTAGCAATTGCAAATATGGTTCTGGGGCTGAAGGAGATTCAAATTCGGGGAGAAATACGTACCAATGTTGATTACACCATTGATCTTCTGCATGCTTCAGACTACAGAGAAAACAAAATTCACACAGGTTGGCTGGACAGTAGAATTGCAATGCGAGTTAGAGCAGAGAGGCCTCCCTGGTATCTTTCTGTCGTTGGAGGGGCACTCTATAAAGCTTCTGCTAGCAGTGCAGCTTTGGTTTCAGACTATGTTGGCTATCTTGAAAAGGGACAAATCCCTCCCAAGCACATATCTCTTGTCCATTCTCAAGTGTCCTTGAACATTGAAGGAAGCAAATATACAATTGACATGATACGAGGTGGGTCTGGAAGTTATAGATTGAGAATGAATCAATCAGAGATAGAAGCAGAAATACATACTTTACGCGATGGAGGTTTGCTAATGCAGTTGGATGGAAACAGTCATGTAATATATGCAGAGGAAGAAGCAGCTGGAACTCGCCTTCTAATAGATGGAAGGACTTGCTTGCTTCAGAATGATCATGATCCATCAAAGTTGGTTGCGGAGACACCATGCAAGCTTCTGAGATATTTGGTTGTGGATGACAGTCATGTTGATGCTGACACACCATATGCTGAAGTTGAGGTCATGAAAATGTGCATGCCTCTTCTTTCGCCTGCTGCTGGGattattcatttcaaaatgtCTGAAGGTCAAGCAATGCAGGCTGGTGAACTTATAGCAAGGCTTGATCTAGATGATCCTTCAGCTGTAAGAAAGACAGAACCCTTCACTGGGAGCTTCCCAGTCCTGGGACCTCCTACTGCAATTTCTGGTAAAGTTCATCAAAAATGTGCTGCAAGCTTAAATGCTGCACGGATGATTCTTGCTGGGTATGAGCACAATATTGATGAAGTTGTGCAAAGTTTGCTTAATTGCCTTGATAGTCCTGAGTTGCCTTTCCTTCAATGGCAAGAGTGCTTTGCAGTTCTGGCAAATCGTCTTCCCAAAGATCTAAAAAATGAGTTGGAATCAAAATATAAGGAGTTCGAGAGGATTTCAAGCTCCCAAATTGTTGATTTCCCTGCCAAATTATTGAAGGGAATTCTTGAAGCTCATCTTTCCTCCTGTCCTGACAAAGAAAAAGGAGCCCAAGAAAGACTTGTTGAACCTCTAATGAGTCTTGTTAAGTCTTATGAGGGTGGAAGAGAGAGCCATGCCCATATAATTGTTCAATCCCTTTTTGAAGAATATCTTTTTGTTGAAGAATTATTTAGCGATAATATACAGGCTGATGTGATTGAACGCATGCGTCTTCAATACAAGAAAGATCTATTGAAGATTGTAGATATAGTGCTCTCTCATCAGGGCATCAAGAGTAAAAATAAGCTGATATTGCGACTAATGGATAAATTGGTTTACCCTAACCCTGCTGCCTATAGGGATCAGTTAATCCGTTTCTCTTTACTCAACCATACAAATTATTCTGAGTTGGCTCTAAAGGCAAGTCAACTTCTGGAACAAACTAAATTAAGTGAACTTCGATCCAACATTGCTAGAAGTCTTTCTGAGCTAGAGATGTTCACAGAGGATGGTGAAAATATTGATACTCCCAAGAGGAAGAGTGCCATTAATGACCGAATGGAGGACCTTGTGAGTGCTCCTTTGGCGGTTGAAGACGCGCTTGTGGGTTTATTTGATCACAGTGATCACACCCTTCAGAGGAGGGTTGTGGAAACTTATATACGCAGGCTCTACCAGCCGTATCTTGTCAAAGGTAGTGTCAGGATGCAATGGCACAGATCTGGACTTATTGCTACATGGGAGTTCTATGATGAGTACATTGAAAGGAAGAATGGGGTTGAAGACCAAACTTCAAATAAAACGGTGGGGGAGAAGCATAGTGAGAAAAAGTGGGGAGTGATGGTTATAATTAAATCTCTTCAATTTTTGCCTGCAATTATCAGTGCTGCATTAAGGGAGGCAACCAATAACCTTCACGAAGCACTTACAAGTGGTTCAGTGGAACCAGTTAACTATGGTAATATGATGCATATTGGATTAGTGGGCATCAACAACCAGATGAGTTTACTGCAGGACAGTGGTGACGAGGATCAAGCTCAAGAAAGAATCAATAAGTTAGCTAAAATACTCAAAGAGCAGGAAGTAGGCTCCACCATACGAGCTACAGGTGTTGGAGTAATCAGCTGTATCATACAAAGGGATGAAGGACGTGCCCCAATGAGGCACTCCTTTCACTGGTCAGAAGAAAAGCTGTATTATGAGGAGGAACCTCTGTTGCGTCATCTGGAACCTCCGCTATCCATTTATCTTGAattgGACAAACTTAAAGGCTATGAGAATATACGGTATACTCCATCTCGAGATCGTCAATGGCACCTCTACACAGTTGTGGATCACAAGCCACTACCAATTCAAAGAATGTTTCTTCGAACACTTCTAAGACAGCCAACCACAAATGAAGGATTCTCTTCGTATCAAAGGATGGATGCAGGAACATCTCGTACCCAATTGGCTATGTCCTTTACTTCAAGGAGCATTTTTAGGTCCTTGATGGCTGCAATGGAAGAGTTGGAACTTAATGCACACAATGCCAATATCAAATCTGAGCATGCTCATATGTACCTCTATATCATACGTGAGCAACAAATAGATGATCTTGTGCCCTATCCCAAGAGAATTAACATAGATGCTGGGAAAGAAGAAACAACAGTTGAGGCAATCTTGGAAGAACTGGCACGGGAAATCCATTCATCTGTTGGTGTAAGAATGCATAGATTAGGGGTTGTTGTGTGGGAAGTCAAGCTCTGGATGGCAGCCTGTGGACAGGCAAATGGTGCTTGGAGGGTCATTGTAAACAATGTGACTGGTCATACATGCACTGTACATATATACCGAGAAAAGGAGGATATTGGTACTCATAAAGTGGTATACAGTTCAGTCTTGGGTAAGGGTCTGCTGCATGGTGTGCCAGTGAATGAAAATTATCAACCTTTGGGAGTTATTGACCGAAAACGTCTTTCAGCAAGAAAGAACAGCACCACATACTGCTACGATTTTCCTCTTGCATTTGAAACAGCCTTGGAACAGTCATGGGCAATCCAACAGCCAGGATTTCAAAGAgccaaagataaaaatcttCTAAAGGTAACAGAGCTTAAATTTGCGGACAAAGAAGGTAGCTGGGGTACTCCTCTTGTTCCTGTGGAGTGTCACCCTGGACTCAATGATGTTGGCATGGTAGCCTGGTTTATGGAAATGTGTACCCCTGAGTTCCCATCTGGAAGGACAATATTGGTTGTTGCAAATGATGTGACTTTCAAGGCTGGTTCTTTTGGACCGAGAGAGGATGCATTCTTCCGTGCAGTAACTGATCTTGCATGTACAAAAAAActacctttaatttatttagcaGCAAATTCTGGTGCCCGTTTAGGTGTAGCTGAGGAAGTCAAATCCTGTTTCAGAGTTGGTTGGTCTGAGGAATCTAATCCTGAGCACGGCTTTCAGTATGTATACTTAACACCTGAGGATTATGCTCGGATTGGATCATCAGTGATGGCACATGAATTGAAGCTTGAGAGTGGAGAAACCAGATGGGTTATAGACACCATTGTTGGCAAGGAGGATGGCCTTGGGGTTGAAAACTTGAGTGGCAGTGGGGCTATTGCTGGTGCTTATTCAAGGGCCTACAAggaaacttttacattgacatatgTGACTGGCAGAACTGTTGGAATTGGTGCTTATCTTGCTAGGCTTGGGATGAGATGCATACAGAGGCTTGATCAGCCCATAATTCTTACTGGTTTTTCAGCATTAAACAAACTGCTTGGTCGGGAGGTATACAGCTCTCACATGCAACTGGGTGGACCTAAAATCATGGCAACTAACGGAGTCGTTCATCTTACAGTTTCCGATGATCTTGAAGgtgtttcttctattttgaagTGGCTTAGCTACATTCCTTCTCATGTAGGTGGTGCACTTCCCATTGTAAAGCCCCTTGATCCTCCAGAAAGACTGGTGGAGTATTTCCCAGAAAACTCTTGTGATCCTCGTGCTGCCATTTCTGGAACCCTGGATGGTAATGGAAGATGGCTGGGAGGCATTTTTGACAAGGACAGCTTTGTGGAGACACTAGAGGGATGGGCAAGAACAGTTGTTACAGGAAGGGCAAAGCTTGGAGGAATCCCTGTTGGAATTGTTGCTGTAGAAACACAGACAGTTATGCAAATAATTCCTGCTGATCCTGGCCAGCTTGATTCTCATGAGAGGGTTGTTCCTCAAGCTGGGCAAGTGTGGTTTCCTGATTCTGCAACCAAGACAGCCCAAGCAATATTGGATTTCAACAGAGAAGAGCTCCCGCTTTTCATTATGGCAAACTGGAGAGGTTTTTCAGGTGGGCAAAGGGACCTTTTTGAAGGAATTCTTCAGGCCGGTTCGACTATTGTGGAGAACCTTAGAACATACAAGCAGCCCATATTTGTATACATTCCAATGATGGGTGAACTCCGTGGCGGGGCATGGGTTGTTGTTGACAGTCGAATCAATTCAGACTACATCGAAATGTATGCGGATAGAACAGCTAAAGGTAATGTCCTTGAGCCAGAAGGAATGATCGAGATCAAATTTAGAACAAGAGAATTGTTGGAGTGTATGGGTAGACTTGATCAACAGTTGATAACTCTGAAGGCAAAACTTCAGGAAGCCAAGAGTAACAGGGACCTCGCCGCCTTGGAATCCCTACAGCTACAGATTAAATCCCGCGAGAAACAGCTTTTGCCTGTGTATACCCAGATAGCTACCAAGTTTGCTGAACTGCATGATACTTCCTTAAGAATGGCTGCCAAGGGTGTCATTAGAGAAGTTCTGGCCTGGGGTAACTCCCGTGCCGTCTTCTACCGGAGACTGCACAGGAGAATTGGCGAGCAGTCACTGATCAACAATGTGAGAGATGCTGCCGGTGACCACTTGTCACATGCATCTGCACTGAACTTGGTCAAAGACTGGTATTTGAATTCTGATATTGCCAAAGGTAGAGAAGGTGCTTGGTTGGACGATGAAGCCTTCTTCAGATGGAAGGATAATCCTACAAATTACGAGAATAAACTAAAGGAATTGCGCGTGCAGAAAGTGTTGCTTCAATTGACAAATATTGGTGACTCAGCTCTAGATTTGCAAGCTCTACCTCAAGGTCTTGCTGCCCTCTTAAGCAAGTTGGAGCCATCGGGTCGTTTGAAGTTGACTGATGAACTTCGCAAGGTACTTGGTTAG 6783 0.43 MADIGHRNGYVNSVLPNRHPAAISEVDEYCKALGGNRPIHSILIANNGMAAVKFIRSVRSWAYETFGSEKAILLVAMATPEDMRINAEHIRIADQFVEVPGGTNNNNYANVQLILEMAEITHVDAVWPGWGHASENPELPDALKAKGIVFLGPPAISMAALGDKIGSSLIAQAADVPTLPWSGSHVKIPPESSLITIPDEIYREACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPIETVKKLEQAARRLAKSVNYVGAATVEYLYSMETGEYYFLELNPRLQVEHPVTEWIAEISLPAAQVAIGMGIPLWQIPEMRRFYGVKHSGGNDAWRKTSVLATPFDFDKAESTRPKGHCVAVRVTSEDPDDGFKPTSGKVQELSFKSKPNVWAYFSVKSGGGIHEFSDSQFGHVFAFGESRALAIANMVLGLKEIQIRGEIRTNVDYTIDLLHASDYRENKIHTGWLDSRIAMRVRAERPPWYLSVVGGALYKASASSAALVSDYVGYLEKGQIPPKHISLVHSQVSLNIEGSKYTIDMIRGGSGSYRLRMNQSEIEAEIHTLRDGGLLMQLDGNSHVIYAEEEAAGTRLLIDGRTCLLQNDHDPSKLVAETPCKLLRYLVVDDSHVDADTPYAEVEVMKMCMPLLSPAAGIIHFKMSEGQAMQAGELIARLDLDDPSAVRKTEPFTGSFPVLGPPTAISGKVHQKCAASLNAARMILAGYEHNIDEVVQSLLNCLDSPELPFLQWQECFAVLANRLPKDLKNELESKYKEFERISSSQIVDFPAKLLKGILEAHLSSCPDKEKGAQERLVEPLMSLVKSYEGGRESHAHIIVQSLFEEYLFVEELFSDNIQADVIERMRLQYKKDLLKIVDIVLSHQGIKSKNKLILRLMDKLVYPNPAAYRDQLIRFSLLNHTNYSELALKASQLLEQTKLSELRSNIARSLSELEMFTEDGENIDTPKRKSAINDRMEDLVSAPLAVEDALVGLFDHSDHTLQRRVVETYIRRLYQPYLVKGSVRMQWHRSGLIATWEFYDEYIERKNGVEDQTSNKTVGEKHSEKKWGVMVIIKSLQFLPAIISAALREATNNLHEALTSGSVEPVNYGNMMHIGLVGINNQMSLLQDSGDEDQAQERINKLAKILKEQEVGSTIRATGVGVISCIIQRDEGRAPMRHSFHWSEEKLYYEEEPLLRHLEPPLSIYLELDKLKGYENIRYTPSRDRQWHLYTVVDHKPLPIQRMFLRTLLRQPTTNEGFSSYQRMDAGTSRTQLAMSFTSRSIFRSLMAAMEELELNAHNANIKSEHAHMYLYIIREQQIDDLVPYPKRINIDAGKEETTVEAILEELAREIHSSVGVRMHRLGVVVWEVKLWMAACGQANGAWRVIVNNVTGHTCTVHIYREKEDIGTHKVVYSSVLGKGLLHGVPVNENYQPLGVIDRKRLSARKNSTTYCYDFPLAFETALEQSWAIQQPGFQRAKDKNLLKVTELKFADKEGSWGTPLVPVECHPGLNDVGMVAWFMEMCTPEFPSGRTILVVANDVTFKAGSFGPREDAFFRAVTDLACTKKLPLIYLAANSGARLGVAEEVKSCFRVGWSEESNPEHGFQYVYLTPEDYARIGSSVMAHELKLESGETRWVIDTIVGKEDGLGVENLSGSGAIAGAYSRAYKETFTLTYVTGRTVGIGAYLARLGMRCIQRLDQPIILTGFSALNKLLGREVYSSHMQLGGPKIMATNGVVHLTVSDDLEGVSSILKWLSYIPSHVGGALPIVKPLDPPERLVEYFPENSCDPRAAISGTLDGNGRWLGGIFDKDSFVETLEGWARTVVTGRAKLGGIPVGIVAVETQTVMQIIPADPGQLDSHERVVPQAGQVWFPDSATKTAQAILDFNREELPLFIMANWRGFSGGQRDLFEGILQAGSTIVENLRTYKQPIFVYIPMMGELRGGAWVVVDSRINSDYIEMYADRTAKGNVLEPEGMIEIKFRTRELLECMGRLDQQLITLKAKLQEAKSNRDLAALESLQLQIKSREKQLLPVYTQIATKFAELHDTSLRMAAKGVIREVLAWGNSRAVFYRRLHRRIGEQSLINNVRDAAGDHLSHASALNLVKDWYLNSDIAKGREGAWLDDEAFFRWKDNPTNYENKLKELRVQKVLLQLTNIGDSALDLQALPQGLAALLSKLEPSGRLKLTDELRKVLG 2260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3078 2260 Pfam Biotin-requiring enzyme 680 745 IPR000089 -
Ssu1g3078 2260 ProSiteProfiles Acetyl-coenzyme A (CoA) carboxyltransferase C-terminal domain profile. 1840 2155 IPR011763 GO:0016874
Ssu1g3078 2260 SMART Biotin_carb_C_2 434 541 IPR005482 -
Ssu1g3078 2260 Gene3D - 1830 2229 - -
Ssu1g3078 2260 Gene3D - 164 204 - -
Ssu1g3078 2260 ProSiteProfiles Biotin carboxylation domain profile. 38 545 IPR011764 -
Ssu1g3078 2260 Pfam Carbamoyl-phosphate synthase L chain, ATP binding domain 206 388 IPR005479 GO:0005524
Ssu1g3078 2260 ProSitePatterns Biotin-requiring enzymes attachment site. 703 720 IPR001882 -
Ssu1g3078 2260 ProSiteProfiles ATP-grasp fold profile. 191 385 IPR011761 GO:0005524|GO:0046872
Ssu1g3078 2260 Coils Coil 2056 2083 - -
Ssu1g3078 2260 Coils Coil 1350 1370 - -
Ssu1g3078 2260 Pfam Biotin carboxylase, N-terminal domain 39 158 IPR005481 -
Ssu1g3078 2260 ProSiteProfiles Biotinyl/lipoyl domain profile. 672 746 IPR000089 -
Ssu1g3078 2260 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 162 400 - -
Ssu1g3078 2260 PANTHER ACETYL-COA CARBOXYLASE, ISOFORM A 12 2259 - -
Ssu1g3078 2260 Pfam Acetyl-CoA carboxylase, central region 746 1489 IPR013537 GO:0003989|GO:0005524|GO:0006633
Ssu1g3078 2260 Gene3D - 10 163 - -
Ssu1g3078 2260 SUPERFAMILY ClpP/crotonase 1500 1826 IPR029045 -
Ssu1g3078 2260 ProSitePatterns Carbamoyl-phosphate synthase subdomain signature 2. 352 359 IPR005479 GO:0005524
Ssu1g3078 2260 SUPERFAMILY PreATP-grasp domain 18 161 IPR016185 -
Ssu1g3078 2260 Gene3D - 676 747 - -
Ssu1g3078 2260 SUPERFAMILY ClpP/crotonase 1831 2221 IPR029045 -
Ssu1g3078 2260 PANTHER BNAC06G01580D PROTEIN 12 2259 - -
Ssu1g3078 2260 SUPERFAMILY Single hybrid motif 678 748 IPR011053 -
Ssu1g3078 2260 CDD biotinyl_domain 681 745 - -
Ssu1g3078 2260 Gene3D - 1498 1825 - -
Ssu1g3078 2260 SUPERFAMILY Rudiment single hybrid motif 429 542 IPR011054 -
Ssu1g3078 2260 Gene3D - 206 268 IPR013815 GO:0005524
Ssu1g3078 2260 Pfam Carboxyl transferase domain 1592 2144 IPR034733 -
Ssu1g3078 2260 Pfam Biotin carboxylase C-terminal domain 435 541 IPR005482 -
Ssu1g3078 2260 Gene3D - 269 527 - -
Ssu1g3078 2260 Gene3D Biotin dependent carboxylase carboxyltransferase 1648 1712 - -
Ssu1g3078 2260 ProSiteProfiles Acetyl-coenzyme A (CoA) carboxyltransferase N-terminal domain profile. 1497 1836 IPR011762 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3078 Ssu-Chr1 80401042 80414863 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3078 5 2260 Acyl Lipid Metabolism Gene Families AT1G36160 81.718 0.0 3861
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3078 K11262 - gmx:100778658 4311.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3078 1 80401042 80414863 Ssu1g3078 1 80401042 80414863 ECH