Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3077 ATGGCTGCTTTCCGTGCCGTGCTTCGTCACATACACATAAACACGTACAGCTTCTTCGCTCCACCGCCGCGCCCGCCTACGGCGTTGGTTTTAAGTtatgctgccacgtggcactGTCTTAGTCCCTCTAAACCCTCCAGAACAGTCAAATCCCGTGCTGGTTCAGACAATTACAAGTTGGTGGCGAAGAAAGACGAGCGGTTGAGGGCGGGGGAGCGTGTCGACGAGGTTGGGAGTGGAAGAGGAACCACAATTGCGGCCATTGTAACTTCCGTGGGGGGTCCCCCTGCGGCCGTTGGAATCGTTCGACTTTCGGGCCCTGGGGCAGTGTCTATTGCGGGCCGAGTGTTTCGGCCCGCCAGGAAGACTTGGCGGCCCACCAGCCACGTCGTGGAATACGGCGTCGTCTTGGACTCCGACGGCAATGTGATCGATGAGGTCTTGGCGGTGCCGATGCTGGCCCCGAGGTCGTACACTCGCGAAGACGTGGTGGAGCTTCAGTGTCACGGGTGCGAAGTGTGTCTGCGTCGCGTGCTAAGGACTTGTTTGGAAGCCGGAGCAACGCTTGCTCGACCAGGCGAGTTTACTCTTCGTGCCTTTCTAAACGGTCGTTTAGATCTCTCCCAAGCCGAAAATGTTGCGAGATTAATCGCCGCCAAATCCGTGGCTGCGGCAGATGCTGCACTGGAAGGAATCCAGGGTGGTTTCTCTTCTCTTGTCCAATCATTGAGGAGTCGGTGCATTGAGTTGCTTACTGAGATTGAAGCTCGTTTGGATTTCGATGATGAGATGCCACCTCTGGATTTGAGTCTGATTATGGATAAAATCCACAACATGTCACGAGATGTTGAGAATGCATTGGAGACAGCAAATTACGACAAGCTTCTGCAATCTGGATTACAGATAGCAATTGTTGGCCGTCCAAATGTTGGCAAGTCAAGCCTTCTTAATGCATGGAGCAAAAGTGAGAGGGCAATAGTTACTGAAATTGCTGGAACCACTCGTGATGTGATTGAAGCAAGTATCAGTGTCAATGGCATTCCTATAACCCTTCTTGATACAGCAGGCATCAGGGACACGGATGACATTGTGGAAAAGATTGGCGTAGAGCGATCTGAAGCAGTTGCTAGGGGTGCTGATTTAATTATCATGACTGTGAGTGCTGTTGAAGGGTGGACATCTGAAGACACCAAACTTCTTGAAAGGATTCAATCTACTAAGGGATCAACTGGATCATCCACCCCAGTAATCCTTGTGGTCAACAAGATAGATTGTAAACCTTGTGCTGAGACTGAATGGGACAAAGGATGTCAGAGTCATAAAATTTTCAGTAAACATGTGTTTACATGTGCTGTGACTGGTCAAGGATTACAAGACTTAGAGAGGGCAGTATTACAGATTGTGGGTCTGGAAGGCATTCCTGCTGGGGGTCGCAGATGGACTGTCAATCAGAGACAATGTGAACAACTTGTTCGGACCAAGGAAGCACTTGCAAGGTtacaatcatcaataaaggAGGAACTGCCTCTGGATTTTTGGACAATTGATTTGAGGGATGCTGCATTGTCCCTTGGACAGATAAGTGGAGAAGATATATCGGAGGAggttttatcaaatatatttggCAAGTTTTGTATTGGTAAATAG 1647 0.4797 MAAFRAVLRHIHINTYSFFAPPPRPPTALVLSYAATWHCLSPSKPSRTVKSRAGSDNYKLVAKKDERLRAGERVDEVGSGRGTTIAAIVTSVGGPPAAVGIVRLSGPGAVSIAGRVFRPARKTWRPTSHVVEYGVVLDSDGNVIDEVLAVPMLAPRSYTREDVVELQCHGCEVCLRRVLRTCLEAGATLARPGEFTLRAFLNGRLDLSQAENVARLIAAKSVAAADAALEGIQGGFSSLVQSLRSRCIELLTEIEARLDFDDEMPPLDLSLIMDKIHNMSRDVENALETANYDKLLQSGLQIAIVGRPNVGKSSLLNAWSKSERAIVTEIAGTTRDVIEASISVNGIPITLLDTAGIRDTDDIVEKIGVERSEAVARGADLIIMTVSAVEGWTSEDTKLLERIQSTKGSTGSSTPVILVVNKIDCKPCAETEWDKGCQSHKIFSKHVFTCAVTGQGLQDLERAVLQIVGLEGIPAGGRRWTVNQRQCEQLVRTKEALARLQSSIKEELPLDFWTIDLRDAALSLGQISGEDISEEVLSNIFGKFCIGK 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3077 548 Pfam GTP-binding protein TrmE N-terminus 84 204 IPR018948 -
Ssu1g3077 548 Pfam 50S ribosome-binding GTPase 301 422 IPR006073 GO:0005525
Ssu1g3077 548 TIGRFAM mnmE_trmE_thdF: tRNA modification GTPase TrmE 97 548 IPR004520 GO:0003924|GO:0005525|GO:0006400
Ssu1g3077 548 ProSiteProfiles TrmE-type guanine nucleotide-binding (G) domain profile. 299 469 IPR031168 -
Ssu1g3077 548 Gene3D tRNA modification GTPase MnmE domain 2 205 548 IPR027368 -
Ssu1g3077 548 PANTHER TRNA MODIFICATION GTPASE GTPBP3, MITOCHONDRIAL 82 548 - -
Ssu1g3077 548 CDD trmE 297 469 IPR031168 -
Ssu1g3077 548 TIGRFAM small_GTP: small GTP-binding protein domain 300 427 IPR005225 GO:0005525
Ssu1g3077 548 Gene3D - 300 476 IPR027417 -
Ssu1g3077 548 Hamap tRNA modification GTPase MnmE [mnmE]. 83 548 IPR004520 GO:0003924|GO:0005525|GO:0006400
Ssu1g3077 548 Pfam MnmE helical domain 207 545 IPR025867 -
Ssu1g3077 548 Gene3D Probable tRNA modification gtpase trme; domain 1 72 204 IPR027266 GO:0005515
Ssu1g3077 548 PANTHER TRNA MODIFICATION GTPASE GTPBP3 82 548 - -
Ssu1g3077 548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 464 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3077 Ssu-Chr1 80393450 80397105 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3077 K03650 - gmx:100779193 978.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3077 1 80393450 80397105 Ssu1g3077 1 80393450 80397105 ECH