Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3068 ATGGGTTCATTTTTCAGTGTGGCGAATTCAAAATCTGACCATAGGGAATGGAATGGAGTCTCTCCAAATGAGACATGTAAGAGGCGAAGAATGTCACCTACTGTTGATGAAGAGAGTCCAAGACTAATTCCTAAACTCCCTGATGAGTTGTCACTTCAGATTATTGCTAGACTTCCTAGAATTTGTTACTTCAATGTTAGGCTGGTATCAAAGAAGTGGAAGTTAACTATCATGAGTTCGGAACTATATAAAGTAAGAAAAGAACTAGGGACAACTGAAGAGTGGCTATATCTGTTGATTAAGGTTGGAGAAAATAATCTTCTGTGGCATGCTCTAGATCCTCGTTCTAAGATATGGCAGAGAGTGCCTAATATGCCCAATTTCGCTAATGAAGAAGAATCTAGAAAAGGTTCTTCTAGGCTTTGGATGTGGAACATGGTGGAAGAGTCTCCATATCTACTTGCTGGTTTCCATGGAAAGCTTCATGTCATTACCAAAGATGCCAATCATAATATTGCTGTTCTGCAGGCTGGCCCACGCAATAATTTGGATTCTTCACCGTCACCCACAACTCTGTCACAAAGTACATTGCATGAATCTCCGGAACTGGCTGCCGAAACAGATGCAGCAGTTGTTTGGAGGGTAGTTGCTAACAGAGATTTTGGGCAGGCTGAACTAGTCAGCTGTCAAGTTATTGATATCTAG 705 0.4128 MGSFFSVANSKSDHREWNGVSPNETCKRRRMSPTVDEESPRLIPKLPDELSLQIIARLPRICYFNVRLVSKKWKLTIMSSELYKVRKELGTTEEWLYLLIKVGENNLLWHALDPRSKIWQRVPNMPNFANEEESRKGSSRLWMWNMVEESPYLLAGFHGKLHVITKDANHNIAVLQAGPRNNLDSSPSPTTLSQSTLHESPELAAETDAAVVWRVVANRDFGQAELVSCQVIDI 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3068 234 SMART fbox_2 46 86 IPR001810 GO:0005515
Ssu1g3068 234 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 3 136 - -
Ssu1g3068 234 MobiDBLite consensus disorder prediction 1 16 - -
Ssu1g3068 234 PANTHER F-BOX/KELCH-REPEAT PROTEIN SKIP4 149 234 - -
Ssu1g3068 234 MobiDBLite consensus disorder prediction 17 39 - -
Ssu1g3068 234 MobiDBLite consensus disorder prediction 1 39 - -
Ssu1g3068 234 Pfam F-box-like 43 84 IPR001810 GO:0005515
Ssu1g3068 234 ProSiteProfiles F-box domain profile. 40 86 IPR001810 GO:0005515
Ssu1g3068 234 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 149 234 - -
Ssu1g3068 234 SUPERFAMILY F-box domain 30 85 IPR036047 GO:0005515
Ssu1g3068 234 MobiDBLite consensus disorder prediction 178 201 - -
Ssu1g3068 234 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 3 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3068 Ssu-Chr1 80125582 80127012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3068 36 130 Miscellaneous Gene Families AT4G33900 35.000 1.61e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3068 - - gmx:100806691 271.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3068 1 80125582 80127012 Ssu1g3068 1 80125582 80127012 ECH