Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3062 ATGAGCAATCTGAGAACCCTATGTAGACCTCAGACGGTGTTCTCTTTCATTAGTTGCAGACACCAATTTAGATCTAGGGTTTCGTTTCGAAACCCTAATTGCAAGCCCCGTTTGCCATCGCCGTCTCTGTATTCTACAATCGGTACTTGGGGCTCGAACCCCTGGTTTCGCGTGAATCAGAGGAGAGCAGTGGCCAAGGCATCCAACTGGGCTGAACAAAAATCCCCGTATGAAACCCTTGAATTGGAAGGAGATGCTGATGAGGAGCAGATAAAGAATGCTTACAGACGCTTGGCCAAATTTTATCATCCAGATGTCTATGATGGCAGAGGAACCCTTGAGGAAGGTGAAACAGCAGAAGCTAGATTCATCAAGATTCAAGCTGCTTATGAATTGCTTATAGATGGGGAGAGACGAAGACAGTATGATATGGATAACAGGGTCAACCCTATGAAGGCATCTCAGGCATGGATGGAGTGGCTTATGAAAAAGCGAAAAGCTTTCGATCAGCGGGGTGATATGGCAATTGCTGCTTGGGCTGAGCAGCAACAGCGCGAGTTAAATCTTCGTGTGCGTCAACTTTCTCGTTCAAAGATTGATCCAGATGAAGCAAGGAAGATTCTGGCAAGAGAAAAGAAGGCTTCGGCTGAATATTTCTCCAGTACCCTTAAAAGGCACACGCTTGTACTGAAGAAAAGAGATTTGATGCGAAGAAAGGCtgaggaagaaaagaagaagactATCAGCCGGCTCTTGGCAGCAGAAGGTCTTGAGCTTGATGAGCTTGATTCTGATAGTGATGAGGCACTGTAG 813 0.4502 MSNLRTLCRPQTVFSFISCRHQFRSRVSFRNPNCKPRLPSPSLYSTIGTWGSNPWFRVNQRRAVAKASNWAEQKSPYETLELEGDADEEQIKNAYRRLAKFYHPDVYDGRGTLEEGETAEARFIKIQAAYELLIDGERRRQYDMDNRVNPMKASQAWMEWLMKKRKAFDQRGDMAIAAWAEQQQRELNLRVRQLSRSKIDPDEARKILAREKKASAEYFSSTLKRHTLVLKKRDLMRRKAEEEKKKTISRLLAAEGLELDELDSDSDEAL 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3062 270 PRINTS DnaJ domain signature 164 183 IPR001623 -
Ssu1g3062 270 PRINTS DnaJ domain signature 118 138 IPR001623 -
Ssu1g3062 270 PRINTS DnaJ domain signature 95 110 IPR001623 -
Ssu1g3062 270 PRINTS DnaJ domain signature 77 95 IPR001623 -
Ssu1g3062 270 PANTHER CO-CHAPERONE PROTEIN DJLA 57 265 - -
Ssu1g3062 270 CDD DnaJ 76 135 IPR001623 -
Ssu1g3062 270 ProSitePatterns Nt-dnaJ domain signature. 123 142 IPR018253 -
Ssu1g3062 270 SUPERFAMILY Chaperone J-domain 70 144 IPR036869 -
Ssu1g3062 270 Pfam DnaJ domain 76 143 IPR001623 -
Ssu1g3062 270 PANTHER LD30543P 57 265 - -
Ssu1g3062 270 Gene3D DnaJ domain 60 162 IPR036869 -
Ssu1g3062 270 SMART dnaj_3 74 138 IPR001623 -
Ssu1g3062 270 ProSiteProfiles dnaJ domain profile. 75 146 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3062 Ssu-Chr1 80049235 80051665 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3062 - - gmx:100808285 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3062 1 80049235 80051665 Ssu1g3062 1 80049235 80051665 ECH