Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3060 ATGGCGGAAAGTTCGGAATGCATTGACGTGAAGCTCTCTCCTGCACCCGATCAACGGATTCCGTTGATGAAATCAGGAAGGGGACGGCGGCGAGGCGACACGTGGGTGGTCTCGGTGTTCGTAATAATCCAAATTGGGGTTTTCATAGCCACCATGCTCGTCAACGATTGCTGGACCAATTCTCATGGCGATTGCGCTCTCCAACCCCTCGGAAGGTTCTCGTTTCAGCCTCTCGCCGAGAATCCTCTCTTAGGTCCTTCTCAGTCCAAGCTAGATGAAATGGGAGCTCTTCGACGGAGCCTTTTGACAGAGCATCACCAAACTTGGCGTCTTTTCACATTTCCATTTTTGCATGCTGGACTGTTCCACCTGCTCCTCAATCTCTGCAGTGTCATCTATGTGGGAGTTCGCCTAGAGCACGAGTTTGGACCCaTAAGGATTGGTATAATCTATGCATTATCTGCTTTTGTGGGTGCCTTGGTGGCTTCTCTTTTTCTCCAAAACACCCCCGCTGTTGGTGCTTCCGGTGCTTTATATGGATTACTGGGAACATTGCTTTCCGAACTTGTTTGGAACTGGAAATTTCATTCCAATAAGATTTCAGCAATAGCCTCATTAGTCTTTGTCTTTGTATGCAACTTCTTCCTTGGTTTTCTGCCTTATGTAGACAACTTTTCAAGCATTGGAGGTTTTATATCAGGATTCCTTCTCGGATCTGTTTTTCTACTCACTCCTCAGCTCCAACCACGAGTAGCTCCAAATAAAGGAGGTCTCATTGATTATGGTGTCAAAAGTTACATCAAGTTAAAGTTGAAGCAAAAGCTGGACAGACCAGTTCTCAGGATTGTTTCTCTTATCCTCTTCAGCCTTTTATTGGCTGGTTGTCTTGTGGCGGTTCTTCATGGAATCAACATCAACAGTAATTGCACATGGTGTCCATATGTTGACTGTATACCTTTTACAAGCTGGCACTGCAAAGACACAGAGAACTCTTGTGAGACAATGGTGAGCAATGCTCAGCTGACAATGACCTGTATTGGGAATGGCAATTTCCGGGTCTTTCCTTTTACAAACATCTCTCGGGCAAGGATTAATGATTTGTGCAATCTGATATGCTGA 1119 0.454 MAESSECIDVKLSPAPDQRIPLMKSGRGRRRGDTWVVSVFVIIQIGVFIATMLVNDCWTNSHGDCALQPLGRFSFQPLAENPLLGPSQSKLDEMGALRRSLLTEHHQTWRLFTFPFLHAGLFHLLLNLCSVIYVGVRLEHEFGPIRIGIIYALSAFVGALVASLFLQNTPAVGASGALYGLLGTLLSELVWNWKFHSNKISAIASLVFVFVCNFFLGFLPYVDNFSSIGGFISGFLLGSVFLLTPQLQPRVAPNKGGLIDYGVKSYIKLKLKQKLDRPVLRIVSLILFSLLLAGCLVAVLHGININSNCTWCPYVDCIPFTSWHCKDTENSCETMVSNAQLTMTCIGNGNFRVFPFTNISRARINDLCNLIC 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3060 372 PANTHER RHOMBOID-LIKE PROTEIN 8 14 372 - -
Ssu1g3060 372 Pfam Rhomboid family 104 243 IPR022764 GO:0004252|GO:0016021
Ssu1g3060 372 Gene3D - 30 244 IPR035952 -
Ssu1g3060 372 SUPERFAMILY Rhomboid-like 32 248 IPR035952 -
Ssu1g3060 372 PANTHER RHOMBOID-RELATED 14 372 IPR002610 GO:0004252|GO:0006508|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3060 Ssu-Chr1 80039475 80042225 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3060 - - gmx:100793747 667.537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3060 1 80039475 80042225 Ssu1g3060 1 80039475 80042225 ECH