Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3058 ATGGACGCCCAGGCGGGTCTCTCTCTCGGGTTGAGCGCCCCTCTCTCATCACCACTCGGCGACACCTCTGTTCCGTGGCGGTTACTCAGCGAAAGACAgcccaaagaagaagaagaagaagaagaagaagacgacAACGACGAAACGATTAACTTGATGGACCGGCGCGTGAGGCGGAAAACGGAGGAACACCGACGGCCGTGTTTCCCTTCGAAGCGCGTGGCGGTGGACTCGGTGGGGTGGTGGAACCAGCCGCTGGGTGTCGCGGACCCCGAGATTTTCGGAATCATGGAAAAGGAGAAACGAAGACAATTCAAGGGAATAGAGTTGATCGCTTCGGAGAACTTCGTGTGCAGGGCAGTAATGGAGGCTTTGGGAAGCCATTTGAGCAACAAGTACTCGGAGGGAATGCCAGGGGCTAAGTACTACACTGGCAATCAGTACATTGATGAGATTGAGTTTCTTTGCTGCCAGCGCGCGTTGTTGGCCTTTGATCTCCACCCCAACAAGTGGGGTGTTAATGTTCAACCTTATTCCTGTACTTCTGCTAACTTTGCTGTCTACACTGGGATTTTGCACCCTGGGGATAGGATCATGGGGCTGGATTCGCCTTCTGGGGGGCATCTGAGTCATGGTTATTATACCCTTGGTGGCAAGAAGGTTTCTGCTGCTTCTATTTTCTTTGAGACTTTGCCTTATAAGGTTAATCCGCAGAGTGGTTACATAGACTATGATAAGCTCGAGGAGAAAGCTGCGGATTTTAGGCCCAAGATACTCATCTGTGGTGGGAGTTCGTACCCCAGGGAATGGGATTATGCCAGGTTCAGGCAGGTTGCTGATAAGTGTGGGGCCGTCTTGATGTGTGACATGGCTCATATCAGTGGTCTTGTGGCGGCTAAGGAAGTAGCTAATCCATTTGATTACTGTGATATTGTTACCTCAACCACCCACAAAAGTCTCCGAGGTCCAAGGGGAGGTATAATCTTTTATAGAAGGGGGACAAAACCAAGGAAGCAAGGTTTCGTTCATAATCATGGAGAAGACAGTAATTATGATTTTGAGGAGAAAATAAACTTTGCTTTATATCCATCATTACAAGGAGGCCCCCACAATAATCATATTGCTGCTCTTGCCATAGCTTTAAAACAAGTTGCAACTCCAGAGTACAAAGCATACATGCAGCAGGTGAAGAGAAATGCACAAGCATTAGCATCTGCCTTGTTGAGAAGAAATTGCAGATTGGTTACTGGTGGGACTGACAATCATCTTTTGCTATGGGATCTAACAGCACTTGGcttaattgAAAGAAACTATGAGAAGGTCTGCGAGGCGTGTCATATCACCCTTAATAAATGTGCCATTTATGGTTCGATTTCTCCTGGAGGAGTGAGAATTGGTACTCCTGCAATGACATCAAGAGGCTGTTTAGAGGAAGATTTTGAGACCATAGCTGATTTTCTTCTTAGGACGGCTCAGATTACCAGCATTGTGCAAAGGGAACATGGGAAATCATGCAAAGATTTTCTCAAGGGTCTTCAGAATAATAAGGATATTTCTGAGCTCAGAAATCGGGTTGAGGCGTTCAGTTCCCAGTTTGCAATGCCAGGATTcgatatttga 1620 0.4574 MDAQAGLSLGLSAPLSSPLGDTSVPWRLLSERQPKEEEEEEEEDDNDETINLMDRRVRRKTEEHRRPCFPSKRVAVDSVGWWNQPLGVADPEIFGIMEKEKRRQFKGIELIASENFVCRAVMEALGSHLSNKYSEGMPGAKYYTGNQYIDEIEFLCCQRALLAFDLHPNKWGVNVQPYSCTSANFAVYTGILHPGDRIMGLDSPSGGHLSHGYYTLGGKKVSAASIFFETLPYKVNPQSGYIDYDKLEEKAADFRPKILICGGSSYPREWDYARFRQVADKCGAVLMCDMAHISGLVAAKEVANPFDYCDIVTSTTHKSLRGPRGGIIFYRRGTKPRKQGFVHNHGEDSNYDFEEKINFALYPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKRNAQALASALLRRNCRLVTGGTDNHLLLWDLTALGLIERNYEKVCEACHITLNKCAIYGSISPGGVRIGTPAMTSRGCLEEDFETIADFLLRTAQITSIVQREHGKSCKDFLKGLQNNKDISELRNRVEAFSSQFAMPGFDI 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3058 539 CDD SHMT 90 528 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Ssu1g3058 539 MobiDBLite consensus disorder prediction 1 51 - -
Ssu1g3058 539 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 7 64 539 - -
Ssu1g3058 539 Gene3D - 115 394 IPR015421 GO:0003824
Ssu1g3058 539 Hamap Serine hydroxymethyltransferase [glyA]. 85 536 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Ssu1g3058 539 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 64 539 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Ssu1g3058 539 Pfam Serine hydroxymethyltransferase 88 486 IPR039429 -
Ssu1g3058 539 PIRSF SHMT 60 539 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Ssu1g3058 539 SUPERFAMILY PLP-dependent transferases 81 536 IPR015424 -
Ssu1g3058 539 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 310 326 IPR019798 GO:0030170
Ssu1g3058 539 Gene3D Aspartate Aminotransferase, domain 1 90 535 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3058 Ssu-Chr1 80014640 80019567 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3058 K00600 - gmx:100776419 990.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3058 1 80014640 80019567 Ssu1g3058 1 80014640 80019567 ECH