Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3057 ATGGCCACATTTCTCTCCAATCAATCTCTGTTGGGTTGTTGTCCTTGTTCTACTCCCTTCTCCTCAAAGCCCTTTCAAACCCTAAAACCCACAATCCTATCTTTTCCATCTCGCGGGTTTCCAAGCCCCCTAATTTCCTCTGTCAATCGAAGAACACCCTTCAAGTCTTCCCAAGATTCCCACCCAACTACAAATGATGAAACAGAGGAGACTCAGAGTGAAGTAAGAGGGGCAGATGATCATGAAGATCGAAAACCATTACCCAGTTTAATGGTCCTCGTTGAAGCATATAAGGAAGCCTTTTTTAGTGGCGACGAAAATACTGTAGCTCAGATTGAAGAGGGATTATATTCATTAgcaaataggaaaaataaattgattcatAAAGTATCAACTTTATCAGCAGACAAAGCTGCTTCCAAGGAGAGATATCTTCGTTTACAAGctgatattgataattttaggAAAAGGTCTGACAAAGAGAGACTTAACATCCAATCTGACGCCCAAAAAGAAGTCATTGAAAAGCTTTTGTTGATGGTGGACAATTTTGAGAGAACCAAACAGCAAACTAAAGCAGCAACAGACAAAGAGAAGAAGATTGATGCTAGCTATCAAGGTATTTACAAGCAATTTGTAGAGGTTATGAGGAGTCATCATGTTTCAGTGGTAGCAACAGTGGGCAAGCAGTTTAATCCCTTGctACATGAAGCCATTGCACGTGAGGAGTCCACAGAGTTCAAGAAAGGGATTATAGTTAAAGAATCCCGACGTGGTTTCTTGCTCAGAGATCGAGTTCTACGGCCAGCCCTTGTCAAGGTTTCCCTAGGTCCTGGCAATAAGAAATCTCCAGTGTCTCCTGACAAGTCCGTGGAGCAGCCTTCAACAGCTGCTGGAATAGATGAAAGATAG 912 0.4057 MATFLSNQSLLGCCPCSTPFSSKPFQTLKPTILSFPSRGFPSPLISSVNRRTPFKSSQDSHPTTNDETEETQSEVRGADDHEDRKPLPSLMVLVEAYKEAFFSGDENTVAQIEEGLYSLANRKNKLIHKVSTLSADKAASKERYLRLQADIDNFRKRSDKERLNIQSDAQKEVIEKLLLMVDNFERTKQQTKAATDKEKKIDASYQGIYKQFVEVMRSHHVSVVATVGKQFNPLLHEAIAREESTEFKKGIIVKESRRGFLLRDRVLRPALVKVSLGPGNKKSPVSPDKSVEQPSTAAGIDER 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3057 303 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 125 219 IPR013805 -
Ssu1g3057 303 MobiDBLite consensus disorder prediction 46 61 - -
Ssu1g3057 303 Gene3D - 105 217 IPR013805 -
Ssu1g3057 303 Hamap Protein GrpE [grpE]. 58 276 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu1g3057 303 Gene3D Head domain of nucleotide exchange factor GrpE 221 275 IPR009012 GO:0006457
Ssu1g3057 303 Coils Coil 174 194 - -
Ssu1g3057 303 MobiDBLite consensus disorder prediction 62 84 - -
Ssu1g3057 303 ProSitePatterns grpE protein signature. 231 274 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu1g3057 303 CDD GrpE 141 274 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu1g3057 303 PRINTS GrpE protein signature 228 243 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu1g3057 303 PRINTS GrpE protein signature 145 161 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu1g3057 303 PRINTS GrpE protein signature 255 274 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu1g3057 303 PRINTS GrpE protein signature 173 188 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu1g3057 303 MobiDBLite consensus disorder prediction 275 303 - -
Ssu1g3057 303 PANTHER GRPE PROTEIN HOMOLOG 2 294 - -
Ssu1g3057 303 PANTHER GRPE PROTEIN 2 294 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu1g3057 303 MobiDBLite consensus disorder prediction 46 84 - -
Ssu1g3057 303 Pfam GrpE 119 275 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Ssu1g3057 303 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 222 276 IPR009012 GO:0006457
Ssu1g3057 303 Coils Coil 137 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3057 Ssu-Chr1 80002980 80007194 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3057 K03687 - gmx:100809893 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3057 1 80002980 80007194 Ssu1g3057 1 80002980 80007194 ECH