Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3054 ATGGAAAACGCCGACGTTTTCTTGGGCTTACACGACTTTCTCGAGCGCATGCGGCAACCCTCCGCCGCTGAATTCGTCAAAGCAATCAAAAGTTTCATCGTCTCGTTTTCGAATAATGCTCCTGATCCTGAGAGGGACAGTGCCGCAGTTCAAGCGTTCCTCTCAAAAATGGAAGCGGATTTCAAGGCTCATCCACTTTGGTCTGGTTGCTCTGAGGAGGAGCTCGAAAGTGCTGGTGAAGGGCTTGAGAAGTATGTTATGACAAAGTTATTTGCTCGTGTATTTGCTTCACTTCCAGATGATGTAAAACTTGATGACCAACTTTATGCGAAGATGGCTTTGATTCAACAATTTATCCGACCTGAAAATTTGGATATCAAGCCAGCATTTCAGAATGAATCATCATGGTTGCTTGCACAGAAAGAATTACAGAAGATCAACATGTACAAGGCACCCAGGGACAAACTTGTCTGTATTCTGAATTGTTGCAAGGTTATTAGCAACTTGCTGCTTAATGCTTCGGTTTCTTCCAAAGAGAATCCTTTTGGAGCTGATGAATTTCTTCCTGTGCTTATTTATGTGACCATAAAGGCAAACCCTCCACAACTGCACTCAAATCTACTGTACATACAAAGGTTTAGACATCAATCTCGATTGGTTGCAGAAGCAGcatattattttacaaacatGCTCTCTGCTGAGTCCTTCATCTCAAACATCGATGCAAAAGCCATTTCCATGGATGAAGCTGAGTTTGAGAGAAACATGGAATTTGCTCGTGCTCTGCTTTCAGGCATTTCAGCTGATACGCAAGATCCTGGTTCACCTTATCAAAATAACGGACAGCATTCAAGAGTAGAACCCACTAAGCACAAAAATAAAGCTTTGAATGATAATAAGGACCCTGCACTACGAACTCCATCATCTGTTGCAAAATCAGAAAACAAGAAAGTGACTTTTGCAGATGAATTATTGATCACAAAAGTTCCATCCCTCTCAGATTTGGAGAATAAAGGGGCAAGTATGATTTTAAGGGAGGATAAGTTGAATGAAGTTTTTGGGGAGTTTCCATATTTGTTTGCTAATGTAGGTGACCTAACAGTAGGTGATGTTCAAGACCTGctaaataattacaaacaacTTGTTTTCAAGTACGTCTCTCTTTCCAAAGGGTTAGGCGTCTCACCCACATTTCATCCACCATCTAATCCCCAAAATAATGCTGAAGACAATGATGAAACTGCAATAGGTTCTTCAGACGCTGGACCTCTAGATGCCAATAATAAATATGGAGAATTTATTGATACAACAGAGGATAGTGTTTCACTTATTGAGGAGAAAAAGCTTGAATCTGGTCTGCCACAGGATGAGCCAGTTGCTCCTGAGGGTGATGCCCCTCTTAACTAA 1407 0.4065 MENADVFLGLHDFLERMRQPSAAEFVKAIKSFIVSFSNNAPDPERDSAAVQAFLSKMEADFKAHPLWSGCSEEELESAGEGLEKYVMTKLFARVFASLPDDVKLDDQLYAKMALIQQFIRPENLDIKPAFQNESSWLLAQKELQKINMYKAPRDKLVCILNCCKVISNLLLNASVSSKENPFGADEFLPVLIYVTIKANPPQLHSNLLYIQRFRHQSRLVAEAAYYFTNMLSAESFISNIDAKAISMDEAEFERNMEFARALLSGISADTQDPGSPYQNNGQHSRVEPTKHKNKALNDNKDPALRTPSSVAKSENKKVTFADELLITKVPSLSDLENKGASMILREDKLNEVFGEFPYLFANVGDLTVGDVQDLLNNYKQLVFKYVSLSKGLGVSPTFHPPSNPQNNAEDNDETAIGSSDAGPLDANNKYGEFIDTTEDSVSLIEEKKLESGLPQDEPVAPEGDAPLN 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3054 468 MobiDBLite consensus disorder prediction 445 468 - -
Ssu1g3054 468 MobiDBLite consensus disorder prediction 269 312 - -
Ssu1g3054 468 MobiDBLite consensus disorder prediction 396 414 - -
Ssu1g3054 468 PANTHER RAB GDP/GTP EXCHANGE FACTOR 1 409 IPR045046 GO:0005085|GO:0016192
Ssu1g3054 468 Pfam Domain of unknown function (DUF5601) 27 91 IPR041545 -
Ssu1g3054 468 MobiDBLite consensus disorder prediction 269 284 - -
Ssu1g3054 468 ProSiteProfiles VPS9 domain profile. 102 246 IPR003123 -
Ssu1g3054 468 MobiDBLite consensus disorder prediction 285 299 - -
Ssu1g3054 468 PANTHER BNAC09G47180D PROTEIN 1 409 - -
Ssu1g3054 468 SMART vps9_2 135 254 IPR003123 -
Ssu1g3054 468 Pfam Vacuolar sorting protein 9 (VPS9) domain 138 241 IPR003123 -
Ssu1g3054 468 SUPERFAMILY VPS9 domain 11 257 IPR037191 -
Ssu1g3054 468 Gene3D VPS9 domain 99 265 IPR037191 -
Ssu1g3054 468 Gene3D - 17 97 - -
Ssu1g3054 468 MobiDBLite consensus disorder prediction 396 432 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3054 Ssu-Chr1 79925132 79932126 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3054 K20131 - gmx:100810958 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3054 1 79925132 79932126 Ssu1g3054 1 79925132 79932126 ECH