Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3040 ATGGAGGCGTTGCAGGCGGTGAAGGACATGTTCCCGCGGATGTCGAACAGCGAGTTGATGGCGCCGGTGGACAATGTAACCGTTTCGACGGAGAAACTGAGGCTTCGGCTTATGGAGGAAGGATTGAGCGAGGGGGCCATTCAGGACAGTGAGCAAATCATGAGGACTGAGTTTGCGGCGCTGCAAAGCCAGCTTGTGCTGCTTAAGCAGAAGCACTCCATCCTCATTGACACGTTGCGCCAATTAGAGACAGAAAAGGTTGATCTGGAGAATACAGTAGTTGATGAGAGCCAAAGACAGTGGAATGATGAAGAGGCTTCCTCAAGATTAGCACAAGAAAAGTTTAGTGGAACTGCAAGTGAATCTGAAGATGACAATGAGAGAAATGATGCTGCAGAGGAAGAAACAGATGATGATGACAATGCCTTTTTTGATACTCGTGATATTCTATCATCCAGTTCTTTTAAAAGTAACGGGTCTGATTATCGAGTATCATCCTTCTCTTCAGATGATGCAGGGTTCTATGCATTTGAATCAGAGGATGATGTAGATCCTTCAATTAGATATGTTGGAACCAATTACCCTCATGTTAAGTGGCGTAAGAAATTGCCAGACCCtgtagaaaaagagaaaggtgTCAGTCTTTGGTCAATGATTAAGGATAATATAGGGAAGGATCTAACAAAAGTTTGCCTTCCTGTTTATTTTAACGAGCCTCTTTCCTCCCTGCAAAAATGTTTTGAAGAAATGGAGTATTCATATCTTCTGGACCAAGCATATGAATGGGGAAGAAAGGGTAATAGCCTCATGAGGATTCTCTATGTCGCAGCTTTTGCTATATCTGGCTATGCTTCAACTGAAGGAAGAGTTTGCAAACCATTTAATCCATTACTTGGGGAAACATATGAGGCTCACTATCCAGATAAAGGCCTTCGTTTTTTCTCAGAGAAGGTCAGTCATCACCCTATGATTGTCGCATGTCACTGTGAGGGTACAGGTTGGAAATTTTGGGGAGATAGCAACCTAAAGAGCAAATTTTGGGGGCGATCAATTCAGCTTGACCCTGTCGGTATTTTGACTTTGGAATTTGATGATGGGGAGGTTTTCCAGTGGAGCAAGGTTACTACATCAATATACAATCTCATATTGGGAAAGCTATACTGTGATCACTATGGTACAATGCGTATACAGGGAAACCAAGAGTACTCGTGTAAACTGAAATTCAAGGAACAATCTATAATTGATCGAAATCCTCACCAGGTTCATGGGATCATTCAAGATAGGAACGGAAAAACTGTATCAACTTTGTTTGGAAAATGGGATGAAAGCATGCATTATGTTAATGGAGACTACACTGGGAAAGGAAAAGGTCATGAATCTTTGTCAGATGCCCGTTTGCTCTGGAAGCGAAGCAAGGCTCCCAAGTTTCCCACTAGATATAACTTCACTCGCTTTGCCATCACATTAAACGAACTTACCCCTGGATTGAAGGAGAAGTTGCCACCTACAGATTCAAGGTTAAGACCAGACCAAAGGTATTTGGAAAATGGGGAGTATGACATGGCAAATTCAGAAAAGATACGGCTAGAGCAGCGGCAGCGCCAGGCTCGGAAGATGCAAGAGAGTGGTTGGAAACCACGGTGGTTTGCCAAGGATAAAGCGAGCGGGACATACCGCTACATAGGAGGGTATTGGGAGGCCCGACAACGAGGAAACTGGGACTCCTGCCCTGACATCTTTGGCCAAATTCCTCCGGATCATATTTCTGACGAAGGACAAATTACACTTTAG 1791 0.4338 MEALQAVKDMFPRMSNSELMAPVDNVTVSTEKLRLRLMEEGLSEGAIQDSEQIMRTEFAALQSQLVLLKQKHSILIDTLRQLETEKVDLENTVVDESQRQWNDEEASSRLAQEKFSGTASESEDDNERNDAAEEETDDDDNAFFDTRDILSSSSFKSNGSDYRVSSFSSDDAGFYAFESEDDVDPSIRYVGTNYPHVKWRKKLPDPVEKEKGVSLWSMIKDNIGKDLTKVCLPVYFNEPLSSLQKCFEEMEYSYLLDQAYEWGRKGNSLMRILYVAAFAISGYASTEGRVCKPFNPLLGETYEAHYPDKGLRFFSEKVSHHPMIVACHCEGTGWKFWGDSNLKSKFWGRSIQLDPVGILTLEFDDGEVFQWSKVTTSIYNLILGKLYCDHYGTMRIQGNQEYSCKLKFKEQSIIDRNPHQVHGIIQDRNGKTVSTLFGKWDESMHYVNGDYTGKGKGHESLSDARLLWKRSKAPKFPTRYNFTRFAITLNELTPGLKEKLPPTDSRLRPDQRYLENGEYDMANSEKIRLEQRQRQARKMQESGWKPRWFAKDKASGTYRYIGGYWEARQRGNWDSCPDIFGQIPPDHISDEGQITL 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3040 596 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 1 586 IPR000648 GO:0008289
Ssu1g3040 596 Coils Coil 72 99 - -
Ssu1g3040 596 MobiDBLite consensus disorder prediction 126 142 - -
Ssu1g3040 596 PANTHER OSBP(OXYSTEROL-BINDING PROTEIN)-RELATED PROTEIN 1C 1 586 - -
Ssu1g3040 596 Gene3D - 511 571 - -
Ssu1g3040 596 SUPERFAMILY Oxysterol-binding protein-like 209 589 IPR037239 -
Ssu1g3040 596 Pfam Oxysterol-binding protein 214 568 IPR000648 GO:0008289
Ssu1g3040 596 Gene3D - 300 479 - -
Ssu1g3040 596 MobiDBLite consensus disorder prediction 98 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3040 Ssu-Chr1 79580844 79585702 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3040 K20456 - gmx:100137077 1140.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3040 1 79580844 79585702 Ssu1g3040 1 79580844 79585702 ECH