Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3035 ATGCGTAACGGGTTAGCAATGGATTTAAACCAAATCCAGTTAGCTTTACGCTGTTGTGGACGCTATCAAGCTATCAAACATGCCAAATCACTCCATTCTCTTATAATAAAACTTGGCCTATTCAATCACGTTTTTCTCCTAAACAACATGATCTCTGTCTACGCAAAGTGTTCCCATTTCTACGATGCACGGACCCTTTTCGACGAAATGCCTCACAGGAACATAATTTCCTACACAACAATGGTCTCTGCATTCACCAACTCTGGGAGACCCCACGAGGCTCTTACACTCTACAACCACATGCTGGAATCCAAAACGGTGCAACCCAATCAGTTCTTGTACTCTGCGGTTCTCAAGGCATGTGGCCTCGTGCGTGATGTTGAGTTGGGCAAGTTGGTTCACCTACATATGTCTCAAGCTAGGTTAGAGTTTGACACTGTTCTGATGAATGCCCTCTTGCACATGTACGTCAAATGTGGGAGCTTGAGGGATGCAAAACGAGTTTTTCATGAAATTCCGTGTAAAAATTCTACTTCATGGAACATCCTCATTCTTGGGCATGCAAAACAGGGTTTGATGAGTGATGCATTGAATCTGTTTGATCAAATGCCAGAACCAGACCTTGTGTCTTGGAACAGCATCATTGCTGGTCTTGCAGATAGTGCTAGCCCCCATGCATTGCAATTTGTTTCTATGATGCACGTGAAGGGCCTTAAACTTGATGCGTTCACATTCCCATGTGCCCTCAAAGCTTGCAGTCTTCTTGGTGAGTTAACCATGGGGAGACAGATTCATTGTTGTATTATCAAGTCAGGGTTTGAGTGTAGCTGTTACTGTATATCAGCATTGATTGATATGTATTCAAATTGCAAGCTATTGGACGAAGCGATAAAGATATTTGATAAGAACTCTCCTCTTGCTGAAAGCTTGGCACTTTGGAATTCCATGCTTTCTGGGTATGTTGCCAATGGAGATTATGCCAAGGCTCTCGGTCTGATTGCACACTTGCATCATTCTGGTGCACAGTTTGATTCGTATACCCTTAGTATTGCTTTAAAGGTCTGCATCAATTTTGATAACTTGAAGTTGGCATCTCAAGTGCATGGATTGGTCATCACTGGTGGCTATGAGTTAGATCATGTTGTTGGAAGCATTCTTATTGATCTATATGCAAAACAGGGCAATATTAACAATGCATTAAGATTGTTTGAAAGGTTGTCAGATAAAGACGTTGTGGCTTGGTCTAGTTTGATTGCTGGTTGTGCTAGATTTGGTTCAGGTACATTAGCTTTTTCCCTCTTTATGGATATGGTTCATTTGGATCTTGAGATTGATCATTTTGTCCTTTCAATCGTTCTGAAAGTTTCTTCAAGTTTGGCATCTCTTCAAAGTGGCAAGCAAATTCATTCTTTCTGTCTTGAGAAGGGGTATGAATCAGAGAGAGTTATTACTACTGCTCTTATTGATATGTATGCAAAATGTGGTGAGATTGAGGATGCCTTATCTTTGTTTCATTCTCTTTCCGAAATAGATACAATGAGTTGGACAGGGATTATCGTGGGATGTGCACAAAATGGAAGAGCAGACAAGGCAATTAGTCTTCTGCATAAGATGATAGAATCTGGTACGAAGCCAAACGAAATCACCATTCTAGGTGCTCTTACTGCATGTAGACATGCTGGCCTAGTTGAAGAGGCATGGACTATATTTAAGTCTATTGAAACAGAGCATGGATTGACACCATGCCCAGAACATTACAATTGTATGGTTGATATACTTGCTCAAGCAGGACGTTTTAAAGAAGCAAGAAATTTGATTAATGACATGCCATTTAAGCCTGACAAAACCATATGGTGCTCCTTGCTTGGTGCCTGTGGAACTTACAAGAATCGACATCTTGCAAATATTGTTGCTGAGCATCTTCTTGCTACCTCACCAGAAGATGCTTCTGTATATATAGTGCTGTCAAATGTTTATGCATCACTTGGAATGTGGGATAATTTAAGCAAAGTGCGAGAAGCTGTCAAAAAAGTGGGCATAAAAGGAGCTGGAAAAAGCTGGATCGAGATCTCTAGTTGA 2079 0.4098 MRNGLAMDLNQIQLALRCCGRYQAIKHAKSLHSLIIKLGLFNHVFLLNNMISVYAKCSHFYDARTLFDEMPHRNIISYTTMVSAFTNSGRPHEALTLYNHMLESKTVQPNQFLYSAVLKACGLVRDVELGKLVHLHMSQARLEFDTVLMNALLHMYVKCGSLRDAKRVFHEIPCKNSTSWNILILGHAKQGLMSDALNLFDQMPEPDLVSWNSIIAGLADSASPHALQFVSMMHVKGLKLDAFTFPCALKACSLLGELTMGRQIHCCIIKSGFECSCYCISALIDMYSNCKLLDEAIKIFDKNSPLAESLALWNSMLSGYVANGDYAKALGLIAHLHHSGAQFDSYTLSIALKVCINFDNLKLASQVHGLVITGGYELDHVVGSILIDLYAKQGNINNALRLFERLSDKDVVAWSSLIAGCARFGSGTLAFSLFMDMVHLDLEIDHFVLSIVLKVSSSLASLQSGKQIHSFCLEKGYESERVITTALIDMYAKCGEIEDALSLFHSLSEIDTMSWTGIIVGCAQNGRADKAISLLHKMIESGTKPNEITILGALTACRHAGLVEEAWTIFKSIETEHGLTPCPEHYNCMVDILAQAGRFKEARNLINDMPFKPDKTIWCSLLGACGTYKNRHLANIVAEHLLATSPEDASVYIVLSNVYASLGMWDNLSKVREAVKKVGIKGAGKSWIEISS 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3035 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 309 343 IPR002885 -
Ssu1g3035 692 Gene3D Tetratricopeptide repeat domain 259 362 IPR011990 GO:0005515
Ssu1g3035 692 Gene3D Tetratricopeptide repeat domain 132 258 IPR011990 GO:0005515
Ssu1g3035 692 Pfam PPR repeat family 74 121 IPR002885 -
Ssu1g3035 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 176 210 IPR002885 -
Ssu1g3035 692 PANTHER BNAC03G28070D PROTEIN 89 687 - -
Ssu1g3035 692 PANTHER BNAC03G28070D PROTEIN 15 124 - -
Ssu1g3035 692 Pfam PPR repeat 412 439 IPR002885 -
Ssu1g3035 692 Pfam PPR repeat 514 542 IPR002885 -
Ssu1g3035 692 Pfam PPR repeat 585 609 IPR002885 -
Ssu1g3035 692 Pfam PPR repeat 485 507 IPR002885 -
Ssu1g3035 692 Pfam PPR repeat 384 410 IPR002885 -
Ssu1g3035 692 Pfam PPR repeat 313 333 IPR002885 -
Ssu1g3035 692 Pfam PPR repeat 281 302 IPR002885 -
Ssu1g3035 692 Pfam PPR repeat 179 205 IPR002885 -
Ssu1g3035 692 Pfam PPR repeat 148 175 IPR002885 -
Ssu1g3035 692 SUPERFAMILY TPR-like 46 667 IPR011990 GO:0005515
Ssu1g3035 692 TIGRFAM PPR: pentatricopeptide repeat domain 179 204 IPR002885 -
Ssu1g3035 692 TIGRFAM PPR: pentatricopeptide repeat domain 485 508 IPR002885 -
Ssu1g3035 692 TIGRFAM PPR: pentatricopeptide repeat domain 76 107 IPR002885 -
Ssu1g3035 692 TIGRFAM PPR: pentatricopeptide repeat domain 312 340 IPR002885 -
Ssu1g3035 692 TIGRFAM PPR: pentatricopeptide repeat domain 586 609 IPR002885 -
Ssu1g3035 692 TIGRFAM PPR: pentatricopeptide repeat domain 514 547 IPR002885 -
Ssu1g3035 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 74 108 IPR002885 -
Ssu1g3035 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 175 IPR002885 -
Ssu1g3035 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 511 545 IPR002885 -
Ssu1g3035 692 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 89 687 - -
Ssu1g3035 692 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 15 124 - -
Ssu1g3035 692 Gene3D Tetratricopeptide repeat domain 1 131 IPR011990 GO:0005515
Ssu1g3035 692 Gene3D Tetratricopeptide repeat domain 363 462 IPR011990 GO:0005515
Ssu1g3035 692 Gene3D Tetratricopeptide repeat domain 483 692 IPR011990 GO:0005515
Ssu1g3035 692 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
Ssu1g3035 692 Pfam E motif 628 689 IPR046848 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3035 Ssu-Chr1 79464621 79466699 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3035 2 690 Glycoside Hydrolase AT3G49170 29.957 1.73e-111 354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3035 - - gmx:100780678 1246.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3035 1 79464621 79466699 Ssu1g3035 1 79464621 79466699 ECH