Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3033 ATGGCTTCTGAGAAGGTTGAGACTGTTGTTGCAGGGAATTACCTAGAAATGGAGAGGGAAGAGGAAGGTTCTAAGTCTACTACTAGCAAATTATCTAGGCTCTTTTGGCACGGTGGCTCTGTCTATGATGCATGGTTTAGCTGTGCTTCTAATCAGGTTGCACAAGTGCTACTGACACTACCATATTCCTTTTCACAACTGGGGATGTTATCTGGGATCATATTTCAGCTTTTTTATGGACTGATGGGAAGCTGGACTGCTTACCTTATCACTGTCCTTTATGTCGAGTACAGAAccagaaaggagagagaaaaagttgATTTCAGAAACCATGTTATTCAGTGGTTTGAAGTGCTTGATGGACTTTTGGGCAAACACTGGAGGAATCTTGGTCTTTTTTTCAACTGTACTTTCCTTCTGTTTGGATCAGTAATTCAACTAATTGCTTGTGCAAGTAACATATACTACATAAATGACAATCTGGACAAGAGAACTTGGACTTACATCTTTGGTGCCTGCTGCGCAACAACAGTCTTCATCCCTTCTTTCCACAATTACAGAATCTGGTCATTCTTGGGCCTCATCATGACCAGTTACACTGCATGGTATATGACCATAGCTTCCCTTGTCCATGGCCAGGTTGAGGGGGTGAAGCACTCAGGCCCAACCAAATTGGTTCTCTACTTCACTGGGGCTACCAACATTCTTTATACTTTCGGTGGACATGCTGTTACAGTGGAAATAATGCATGCAATGTGGAAGCCACAGAAGTTTAAGCTGATATATCTAATCGCAACCCTATATGTGTTGACCCTAACTTTGCCATCAGCAGCTGCTGTCTACTGGGCATTTGGGGACCTGCTTCTTACCCATTCCAATGCCCTCTCATTGCTCCCAAGGACAGGCTTCAGAGATACCGCTGTCATTCTCATGCTCATTCATCAGTTCATAACTTTTGGATTTGCTTGCACTCCTCTATACTTCGTGTGGGAGAAATTCATTGGGGTGCATGAAACCAAGAGTTTGTTTAAAAGGGCGTTGACTAGACTTCCTGTTGTGATTCCAATATGGTTCCTGGCAATCATATTCCCTTTCTTTGGTCCCATTAACTCAACTGTTGGATCTCTCCTGGTCAGCTTCACTGTCTACATAATTCCTTCCTTGGCACACATGGTGACCTTTGCTTCAGCACCGGCTAGGGAGAATGCTGTGGAGAGACCACCATCAATGTTAGGAGGTTGGGTAGGATTGTACTCCATGAACGTGTTTGTGGTGGTATGGGTTTTGGTGGTAGGATTTGGGTTGGGAGGATGGGCAAGCATGATTAATTTCATACGCCAAATTAACACATTTGGGCTATTTGCAAAGTGCTATCAGTGTCCCCCTCACAAGGCTTAA 1398 0.432 MASEKVETVVAGNYLEMEREEEGSKSTTSKLSRLFWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGIIFQLFYGLMGSWTAYLITVLYVEYRTRKEREKVDFRNHVIQWFEVLDGLLGKHWRNLGLFFNCTFLLFGSVIQLIACASNIYYINDNLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLIMTSYTAWYMTIASLVHGQVEGVKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKLIYLIATLYVLTLTLPSAAAVYWAFGDLLLTHSNALSLLPRTGFRDTAVILMLIHQFITFGFACTPLYFVWEKFIGVHETKSLFKRALTRLPVVIPIWFLAIIFPFFGPINSTVGSLLVSFTVYIIPSLAHMVTFASAPARENAVERPPSMLGGWVGLYSMNVFVVVWVLVVGFGLGGWASMINFIRQINTFGLFAKCYQCPPHKA 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3033 465 PANTHER AUXIN TRANSPORTER-LIKE PROTEIN 3 3 460 - -
Ssu1g3033 465 PANTHER OS05G0424000 PROTEIN-RELATED 3 460 - -
Ssu1g3033 465 Pfam Transmembrane amino acid transporter protein 37 430 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3033 Ssu-Chr1 79445136 79447551 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3033 1 464 Organic Solute Cotransporters AT1G77690 87.633 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3033 K13946 - gmx:100815243 910.598
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3033 1 79445136 79447551 Ssu1g3033 1 79445136 79447551 ECH