Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3029 aTGGAGATGTTGAGGGTGCAAAGCATAGCTTCTCAATCCAAGAAAACCATTCCTGTAGAGTTTATTAGGTCAGAGACAGAGCAACCAAGCATCACAACCGTTCATGGAACCCAACTCGAGGTTCCTATAATTGATTTCAGCAACCCTGATGAAGATAAGGTGTTGCATGAAATTATGGAGGCAAGTCGTGACTGGGGCATGTTCCAAATTGTGAACCATGAAATACCTAGCCAAGTTATAAGAAAACTTCAAGCCGTGGGAAAAGAGTTCTTTGAGTTACcacaagaagaaaaggaacaatACGCTAAGCCTGCTGACTCTTCAACTATAGAAGGTTATGGGACAAAGCTTCAAAAGGAGGTGGATAACAAGAAAGGTTGGGTGGACCATTTATTCCACAAGATATGGCCACCTTCAGACATTAACTATCGCTTCTGGCCTAAGAACCCTCCTTCTTACAGAGAGGTTAATGAAGAATATGGGAAGTACCTACACGGGGTTATTGACACGCTGTTCAAAAGCATGTCAATGGGGTTGGGGCTCAAAGGACATGAACTGAAAGAGTTTGCAGGCGGTGATAACATGGTTCACCTTTTAAAAATCAACTACTACCCACCTTGCCCATGCCCTGATCTTGTCCTCGGTGTGCCAGCTCATACGGACATGTGCTGCATTACCCTTCTTGTGCCCAACCACGTTCAGGGCCTTCAAGCCTCTAGAGATGGCCGTTGGTACGACGTTAAGTATATCCCCAATGCTTTGGTCATTCACATTGGGGATCAAATGGAGATAATGAGCAATGGAAAATACAAGGCCGTGTTTCACAGGACAACAGTGAGCAAAGAAGAAACAAGAATTTCTTGGCCAGTGTTCATAGAGCCCCGACCAGAGCACGTAGTGGGCCCTCACACAAAGCTGGTTAACCAAGACAACCCACCAAAATATAAGAGCAAAAAATACAAGGATTATGCTTACTGTAAGCTCAACAAGATTCCTCAGTAA 1002 0.4351 MEMLRVQSIASQSKKTIPVEFIRSETEQPSITTVHGTQLEVPIIDFSNPDEDKVLHEIMEASRDWGMFQIVNHEIPSQVIRKLQAVGKEFFELPQEEKEQYAKPADSSTIEGYGTKLQKEVDNKKGWVDHLFHKIWPPSDINYRFWPKNPPSYREVNEEYGKYLHGVIDTLFKSMSMGLGLKGHELKEFAGGDNMVHLLKINYYPPCPCPDLVLGVPAHTDMCCITLLVPNHVQGLQASRDGRWYDVKYIPNALVIHIGDQMEIMSNGKYKAVFHRTTVSKEETRISWPVFIEPRPEHVVGPHTKLVNQDNPPKYKSKKYKDYAYCKLNKIPQ 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3029 333 Pfam non-haem dioxygenase in morphine synthesis N-terminal 41 148 IPR026992 -
Ssu1g3029 333 SUPERFAMILY Clavaminate synthase-like 3 331 - -
Ssu1g3029 333 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 195 294 IPR005123 -
Ssu1g3029 333 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 11 330 - -
Ssu1g3029 333 Gene3D - 2 331 IPR027443 -
Ssu1g3029 333 PANTHER FLAVONOL SYNTHASE/FLAVANONE 3-HYDROXYLASE 11 330 - -
Ssu1g3029 333 Pfam 2OG-Fe(II) oxygenase superfamily 197 294 IPR044861 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3029 Ssu-Chr1 79369093 79373193 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3029 37 324 Glycosyltransferase AT5G59530 31.068 1.11e-42 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3029 K05278 - gmx:100816829 634.795
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3029 1 79369093 79373193 Ssu1g3029 1 79369093 79373193 ECH