Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3025 ATGTCTACTTTTTCCACTCAGAATGACACCGTCGCGCATCCGTTGCAGGTTGCGAAGCGCTTAGAGAAGTTCCAAAAAGAACATAGGCAAGGTGCAAACAACAAGAATGATGGAACCATAAACCTTGGACGAGGCTTTCCCAACTTTGATGGCCCAGAGTTTATAAAGGAAGCAGCAATTCAGGCAATCAGGGATGGGAAAAATCAGTATGCACGAGGTTTTGGGGTTCCAGACCTGAACATTGCTATTGCTGATAGATTTAAGAAAGATACTGGATTAGTGGTAGACCCTGAAAAGGAAGTTACAGTCACAACTGGGTGCTTAGAAGCTATTTCTGCAACCGTATTAGGATTAATAAATCCTGGTGATGAGGTTATCTTGTTTACTCCTTTATATGATTGTTATGAAGCCATTTTAACCATGGGTGGTGCAAAAATAATAAGCATCACTTTGCACCCTCCAGATTTTGCTGTcccaattgaaaaattgaagtcCATCGTGTCAAGGAATACCCGTGCCATTCTTGTAAATACTCCTCACAACCCTACTGGAAAGATGTTCACATTAGATGAGCTAAATACCATTGCATCCCATTGCATTGAGAATGATGTTCTGGTTTTTGCTGATGAAGTTTATGATAAGTTGGCATTTGATATGGAGCACATTTCGATGGCTTCTTTGCCTGGAATGTTTGAAAGGACAGTGACAATGAACTCCTTGGCAAAGACATTCTCCTTAACAGGATGGAAGATTGGTTGGGCCATAGCACCCACACACCTAACATGGGGAGTGCGACAGGCACACGCTTTCCTCACTTTCTCAACCGCCAATCCTTTGCAGTGTGCAACTGCAGTAGCTCTTAGAGCACCAGACTCTTACTATGTAGAGCTGAAGAGGGATTATATGGCAAAGAGGGCTATTCTGGTGGAAGGATTAAAGGAGGTTGGCTTCAAGGTATTCCCACCAAATGGAACATTCTTTATGTTAGCTGATCACACCCCTTTTGGACTGGAAAATGATGTTGCATTTTGTGAATATCTACTTAAGGAGGTCGGGGTGCTGGCAATCCCTTGCAGTGTGTTTAGCTTGAATCCAGAAGAGGGAAAGAATCTAGTCAGATTTGTCTTCTGCAAGGATGAGCAAACTCTTAGGGCCGCAGTTGAGAGGATGAAGGAGAAGCTTAGAAAATGA 1191 0.4232 MSTFSTQNDTVAHPLQVAKRLEKFQKEHRQGANNKNDGTINLGRGFPNFDGPEFIKEAAIQAIRDGKNQYARGFGVPDLNIAIADRFKKDTGLVVDPEKEVTVTTGCLEAISATVLGLINPGDEVILFTPLYDCYEAILTMGGAKIISITLHPPDFAVPIEKLKSIVSRNTRAILVNTPHNPTGKMFTLDELNTIASHCIENDVLVFADEVYDKLAFDMEHISMASLPGMFERTVTMNSLAKTFSLTGWKIGWAIAPTHLTWGVRQAHAFLTFSTANPLQCATAVALRAPDSYYVELKRDYMAKRAILVEGLKEVGFKVFPPNGTFFMLADHTPFGLENDVAFCEYLLKEVGVLAIPCSVFSLNPEEGKNLVRFVFCKDEQTLRAAVERMKEKLRK 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3025 396 Coils Coil 387 396 - -
Ssu1g3025 396 SUPERFAMILY PLP-dependent transferases 33 395 IPR015424 -
Ssu1g3025 396 Gene3D - 52 290 IPR015421 GO:0003824
Ssu1g3025 396 Pfam Aminotransferase class I and II 40 389 IPR004839 GO:0009058|GO:0030170
Ssu1g3025 396 PANTHER FI04487P 18 396 - -
Ssu1g3025 396 CDD AAT_like 40 392 - -
Ssu1g3025 396 PANTHER FI04487P 18 396 - -
Ssu1g3025 396 Gene3D Aspartate Aminotransferase, domain 1 35 390 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3025 Ssu-Chr1 79253653 79262138 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3025 K23977 - gmx:100814682 656.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3025 1 79253653 79262138 Ssu1g3025 1 79253653 79262138 ECH