Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3017 ATGGCGAAGGACATCAACCTAAGCTCTCGAACCCGAAACCCTCTGCTCTTGCTGTTATGCTTCACCACTCTTATGCTCCTTCGCACTGAGGCTGTATGGTTAACCATCCCCAGTAAGGGAACCAAGTGTATGTCCGAGGAAATCCAGACACACGTCGTCGTTTTAGCCGATTACTATGTGGTAGCTGATGATGTCAAGGGTCACCAGCTTCAAACTATTTCAGCCAaggTGACATCCCCTTATGGAAATACGCTTCACCAGAATGAAAATGTTACCCACGGACAGTTTGCATTTACAACTACCGAGACTGGGAACTACGTGGCTTGCTTTTGGGTGGATACCAAACGTCAAGAAGGTGCAGGAGAGACCACAATCAGCCTTGAATGGAAAACTGGAATCGCTGCCAAAGATTGGGACTCCGTTgctagaaaagaaaagatagagGGTGTTGAACTTGAGCTAAGGAAACTTGAAGGGGCCGTGGAAGCCATCCGGGAcaatctaatttatttgaagAATAGGGAAGCGGAGATGAGGGAAGTTAGTGAAACAACCAATGCTAAAGTCGCTTGGTTCAGTATCTTTTCTCTTGGTGTCTGCATTTTGGTTTCGGTGTTGCAGCTGTGGTATCTGAAACGCTTCTTTCGGAAGAAGAAGCTCATATAG 666 0.4429 MAKDINLSSRTRNPLLLLLCFTTLMLLRTEAVWLTIPSKGTKCMSEEIQTHVVVLADYYVVADDVKGHQLQTISAKVTSPYGNTLHQNENVTHGQFAFTTTETGNYVACFWVDTKRQEGAGETTISLEWKTGIAAKDWDSVARKEKIEGVELELRKLEGAVEAIRDNLIYLKNREAEMREVSETTNAKVAWFSIFSLGVCILVSVLQLWYLKRFFRKKKLI 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3017 221 Coils Coil 147 174 - -
Ssu1g3017 221 ProSiteProfiles GOLD domain profile. 41 156 IPR009038 -
Ssu1g3017 221 Pfam emp24/gp25L/p24 family/GOLD 33 216 IPR009038 -
Ssu1g3017 221 PANTHER EMP24/GP25L/P24 FAMILY PROTEIN 12 221 - -
Ssu1g3017 221 PANTHER TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN 12 221 IPR015720 -
Ssu1g3017 221 SMART EMP24_GP25L_2 31 216 IPR009038 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3017 Ssu-Chr1 79153039 79154515 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3017 K20352 - gmx:100500676 387.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3017 1 79153039 79154515 Ssu1g3017 1 79153039 79154515 ECH