Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3010 ATGGCAGAGGACAGCGAGGGGAAGAAAGAGGAGAATATAGAGTCCCAGATTGAAACCGCTATGCGCTCTCGCGTCTCTCACTTCAAGGAACGATCCGACTCTCTGACATTCGAGGGGGTTCGTCGATTGCTCGAGAAAGACCTGGGATTAGAGGAGTACGCTTTGGATGTGCATAAGAGATTTATCAAGCAATGTTTGGTCAAGTGCTTAGAAGGggttggtgatgatgatggccCAAAGATATCAGGGAAGGAAGGGGAAAAAGGTGCAGGTACACAAGAGTCGGAAGGACCGAAAGAAGAATATGAATCAAAAGATGTGAAGGATGTTTGCCTTGAAGATGAGGAGAACATGGAAGACTCTCCAGTGTTGGGTCTtcttaaagaacaaaaaaaggcTAAACTTGAAACCAAGGATGATAAAGGCAATGGAACCAAAGTGGTTCCGAGTGAGGCCCTAATTAAGAAAGCTGTTAGAAAAAGATCTTTGTACATCAAGGCTAATACAGAGAAAATCACTATGGCTGGTCTTCGTCGACTATTGGAGGAAGATCTTAAACTTGATAAATTTACTCTTGATCCCTATAAGAAGTTTATAAGTCAACAGCTTGATGAGGTATTAGCGTCTTCTGAGGTTACAGAACCTGCAAAGCATGCTAAGAAAATCGTTAAGAAAAAACCTGATACCAAAGTAACTAAAAAGGTCAGCAGTGAAGAGAACTCTGATACTTCAGATAAGGAGACTGATGAGGAAGAGAGTCAGGAAGATGAAGTTAAACCTAGAAAAAAGATTGTTCCGAAAGGCAAGATGCAGACTTCTATCCGACCCAAAAAGCGTAAAAAAGAGGACACTGATCTATCCAGTAAGAAAAGGGTCAAGCCTGCTAAAGCAGCCTCAGAAGACAACAGTGATGCAGAAGATAGTGGGAAAAACTCTGAAGATGATCAGTCCCATTCATCTCCGGGGAAACCTTCCAAGAAGAAGGAAGTTTCAACTCCTGTGTATGGTAAACGTGTGGAGCACTTAAAGTCTGTTATCAAAGCTTGTGGAATGAGTGTTCCTccctcaatttacaaaaaagtcAAGCAAGTGCCTGAAAACAAACGGGAAGGGCAGCTAATTAAGGAGTTGGAGGAAATACTGTCTAGAGAAGGATTGTCTTCAAATCCATCTGAAAAGGAAATcaaggaaataaaaaggaagaaggcGAGAGCCAAAGAACTTGAGGGTATTGATGTAAGCAATATTGTGTCAAGTTCACGTAGAAGGTCAACAACTAGTTTCGCAGCTTCTCCACCACCAAAGCCCAAGGTTCCAGTTGAAACTAGTGGCAAGGATGCTGAAGGTGGTGATATtgacaatgatgatgaagacaatgataatgaagaggatgaagaagatgaagaggaGGATAGCGGTGATGATGATGGAAGTCAGAGTGAAGAATTTAATGACGATGAAGAGGACAGTGATTGA 1476 0.3848 MAEDSEGKKEENIESQIETAMRSRVSHFKERSDSLTFEGVRRLLEKDLGLEEYALDVHKRFIKQCLVKCLEGVGDDDGPKISGKEGEKGAGTQESEGPKEEYESKDVKDVCLEDEENMEDSPVLGLLKEQKKAKLETKDDKGNGTKVVPSEALIKKAVRKRSLYIKANTEKITMAGLRRLLEEDLKLDKFTLDPYKKFISQQLDEVLASSEVTEPAKHAKKIVKKKPDTKVTKKVSSEENSDTSDKETDEEESQEDEVKPRKKIVPKGKMQTSIRPKKRKKEDTDLSSKKRVKPAKAASEDNSDAEDSGKNSEDDQSHSSPGKPSKKKEVSTPVYGKRVEHLKSVIKACGMSVPPSIYKKVKQVPENKREGQLIKELEEILSREGLSSNPSEKEIKEIKRKKARAKELEGIDVSNIVSSSRRRSTTSFAASPPPKPKVPVETSGKDAEGGDIDNDDEDNDNEEDEEDEEEDSGDDDGSQSEEFNDDEEDSD 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3010 491 MobiDBLite consensus disorder prediction 77 106 - -
Ssu1g3010 491 PANTHER HIRA-INTERACTING PROTEIN 3 1 490 IPR037647 -
Ssu1g3010 491 MobiDBLite consensus disorder prediction 413 431 - -
Ssu1g3010 491 MobiDBLite consensus disorder prediction 212 337 - -
Ssu1g3010 491 MobiDBLite consensus disorder prediction 384 491 - -
Ssu1g3010 491 MobiDBLite consensus disorder prediction 389 409 - -
Ssu1g3010 491 MobiDBLite consensus disorder prediction 276 337 - -
Ssu1g3010 491 Pfam Histone chaperone domain CHZ 404 435 IPR019098 -
Ssu1g3010 491 Coils Coil 452 472 - -
Ssu1g3010 491 SMART CHZ_2 402 437 IPR019098 -
Ssu1g3010 491 MobiDBLite consensus disorder prediction 450 491 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3010 2 82 EF-hand Containing Proteins AT1G44780 40.244 1.29e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3010 - - gmx:100784738 674.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3010 1 78821627 78825894 Ssu1g3010 1 78821627 78825894 ECH