Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g3002 ATGAACGCCTACATTGTCGGCCTCGTGGTTCCCCTCCTCGTCCTCCTCTACCGCAACCGCAACTCCACCAAGCGGCGCGGCTTGCCCGCCGACGTCGGCGGCGAGCCCGGCCTCGCGGTGAGGAACCACCGCTTCGGCTCGGCGCTGAGTTCGGCGTGGGAGGGCGTGACCACGCTGGCGGAGCTGTTCGAGCGCGCATGCAGGGAGCACCAGGAGCGCGTCTTGCTCGGCACGCGCCTGTTGATCTCGCGTGAGGTTGAGACCTCTCAGGACGGTAGAACCTTCGAGAAGCTTCACCTCGGGGATTACCAGTGGCTCACCTACGGGAAAGTCTTCGAATCCGTCTCGAGTTTCGCGTCCGGCTTGGCTACGCTCGGCCATCGCAGGGAAGAGCGCGTGGCTATCTTCGCTGACACCAGAGAACGATGGTTTATTGCACTGCAGGGTTGCTTCCGGAGGAATCTGACAGTTGTGACTATATATGCGTCGTTGGGGGAGGAAGCTTTGTGTCACTCGTTGAATGAGACAGAGGTTACAACTGTGATTTGTGGGCGCAAAGAATTGAAATCGCTAGTACATATTAGTGGTCAGCTTGACTCAGTGAAACGTGTGATATGCATGGACGACGATATCCCATCTGATGCCTCATCTGCTCAGCATGGCTGGACAGTCACTTCCTTTGCTGACGTTGAGAGGCTCGGTAGAGAAATTCCTGTTGAGGCTGATTTACCCCTTTCAGCGGATGTTGCAGTTATAATGTACACAAGTGGAAGTGCAGGATTGCCCAAGGGTGTGATGATGACACATGGCAATGTCTTGGCAACAGTCTCTGCTGTAATGATGATAGTTCCTAAACTTGGGCCGAAGGATGTCTATCTAGCATACTTACCAATGGCTCATATCCTTGAATTAGTAGCAGAGAATTTGATTGCAGCTGTTGGAGGTTCTATAGGATATGGATCTGCTTTGACTTTAACTGATACAtcgaacaaaataaaaaaggggaaaagggGGGATGCCACTGCATTGATGCCAACTGTGATGGCAGCTGTACCAGCAATTCTTGATCGTGTACGCGATGGAGTGCTTAGGAAGGTAAATGCAAAGGGAGGATTGTCaaagaaattgttttatttagcCTATGCACGAAGGTTGCATGCAATTAATGGTAGCTGGTTTGGTGCTTGGGGCTTGGAAAAAGCTCTATGGCATTTTCTTGTGTTCAGAAAGGTTCAAGCAATTTTGGGTGGTCGCATCCGGTTTATACTGTGTGGTGGTGCTCCCCTTTCCAGTGATACCCAAAGATTCATCAATATTTGTCTTGGTGCTCCAATAGGTCAAGGATATGGTCTCACAGAGACTTGTGCTGGTGGGACATTCTCTGATTTCGACGATACATCTGTTGGCCGTGTTGGGCCACCTCTTCCTTGCTCATATATTAAGCTAATTGACTGGCCTGAAGGTGGATATTCAACTAATGACTCACCAATGCCCCGTGGTGAAATTGTAATTGGTGGTCCAAATGTCACTCTTGGGTACttcaaaaatgaagaaaaaacaaaagaatctTACAAGGTTGATGAAAGAGGAATGAGGTGGTTCTACACTGGTGACGTAGGGAAATTTCATAAAGATGGTTGCCTTGAGATCATTGATCGGAAAAAGGACATAGTTAAACTGCAGCATGGAGAATATGTGTCCTTGGGAAAGgTTGAGGCAGCTCTTTTTGCCAGTCCCTTCGTAGACAATATCATGTTGCATGCTGATCCTTTTCGTAGCTACTGTGTGGCACTCGTGGCAGTTTCTCATCCCGTATTGGAGCAATGGGCTTCAAAGCAAGGAATTGCTTATTCTGATCTTTCAGAACTGTGCATGAAAGAAGAAACTGTGAAGAAGGTGCACGCATCACTTGTAAAGGAAGCAAAGAAGGCTCGTTTGGAAAAATTTGAGATTCCTGCAAAAATTAAGTTGCTTTCTGAGCCATGGACTCCTGAATCTGGCCTAGTCACTGCAGCTCTTAAGCTCAAGAGAGAGATAATTAGAAAGACTTTTCAAGAACAGCTCTCAAAGTTATATTCCTCGTAG 2085 0.4695 MNAYIVGLVVPLLVLLYRNRNSTKRRGLPADVGGEPGLAVRNHRFGSALSSAWEGVTTLAELFERACREHQERVLLGTRLLISREVETSQDGRTFEKLHLGDYQWLTYGKVFESVSSFASGLATLGHRREERVAIFADTRERWFIALQGCFRRNLTVVTIYASLGEEALCHSLNETEVTTVICGRKELKSLVHISGQLDSVKRVICMDDDIPSDASSAQHGWTVTSFADVERLGREIPVEADLPLSADVAVIMYTSGSAGLPKGVMMTHGNVLATVSAVMMIVPKLGPKDVYLAYLPMAHILELVAENLIAAVGGSIGYGSALTLTDTSNKIKKGKRGDATALMPTVMAAVPAILDRVRDGVLRKVNAKGGLSKKLFYLAYARRLHAINGSWFGAWGLEKALWHFLVFRKVQAILGGRIRFILCGGAPLSSDTQRFINICLGAPIGQGYGLTETCAGGTFSDFDDTSVGRVGPPLPCSYIKLIDWPEGGYSTNDSPMPRGEIVIGGPNVTLGYFKNEEKTKESYKVDERGMRWFYTGDVGKFHKDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALFASPFVDNIMLHADPFRSYCVALVAVSHPVLEQWASKQGIAYSDLSELCMKEETVKKVHASLVKEAKKARLEKFEIPAKIKLLSEPWTPESGLVTAALKLKREIIRKTFQEQLSKLYSS 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g3002 694 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 10 693 - -
Ssu1g3002 694 PANTHER BACTERIAL LONG-CHAIN FATTY ACID COA SYNTHETASE 10 693 - -
Ssu1g3002 694 Pfam AMP-binding enzyme 97 561 IPR000873 -
Ssu1g3002 694 Gene3D - 48 553 IPR042099 -
Ssu1g3002 694 SUPERFAMILY Acetyl-CoA synthetase-like 55 692 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g3002 Ssu-Chr1 78728440 78734550 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g3002 24 693 Acyl Lipid Metabolism Gene Families AT2G04350 63.001 0.0 904
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g3002 K01897 - gmx:100778889 1266.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g3002 1 78728440 78734550 Ssu1g3002 1 78728440 78734550 ECH