Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2999 ATGGCTCAAACCATGTTGCTCATGTCCAGTGTCTCTAGCAGTTATTCCGTGAATTTGAAGAAAGACCTTTGCCTCCAACTTCAGAGTCAAAGATTAAGGCCTAAGTTCGCTCATCTCTCATTCAACCCACTTCCATCaaattctttgttttcttcACCCCGTACATTCACAACTCTGGCCCTCTTCAAATCAAAGACCAAAGCCCCCCCTGCTAAGACTAAGGTTACAAAGCCAAAGCCAAAGGTTGAAGATGGTGTCTTTGGCACTTCCGGAGGGTTTGGTTTTACTAAGCAGAATGAGCTCTTTGTGGGTCGTGTTGCTATGCTTGGTTTTGCAGCATCACTGTTGGGTGAAGGAATAACTGGCAAGGGAATTCTAGCGCAATTGAATCTGGAAACTGGAATTCCCATTTATGAAGCGGAgcctcttcttctcttcttcatcCTTTTCACCCTGCTAGGAGCCATTGGAGCTTTAGGTGACcgtggtaaatttgttgatgacGAACCTAATACTGGAGGTGTTATTCCCCCAGGCAAAGGCGTCAGGGAAGCTCTTGGTCTCGGTGGAGGAGGTCCTTTATTTGGATTCACCAAAGCCAACGAGCTTTTTGTGGGAAGATTGGCTCAATTGGGTTTCGCTTTCTCTTTGATTGGAGAAATTATTACTGGGAAGGGAGCTCTAGCCCAGCTCAACATTGAGACTGGGGTACCAATCAATGAAATCGAACCCCTAGTGTTGTTCAACGTTCTTTTCTTCTTCGTTGCTGCTTTGAATCCTGGAACTGGCAAATTCCTTACAGATGAGGAGCAGGATGATTAG 822 0.427 MAQTMLLMSSVSSSYSVNLKKDLCLQLQSQRLRPKFAHLSFNPLPSNSLFSSPRTFTTLALFKSKTKAPPAKTKVTKPKPKVEDGVFGTSGGFGFTKQNELFVGRVAMLGFAASLLGEGITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDEPNTGGVIPPGKGVREALGLGGGGPLFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLFNVLFFFVAALNPGTGKFLTDEEQDD 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2999 273 PANTHER UPF0041 BRAIN PROTEIN 44-RELATED 1 183 - -
Ssu1g2999 273 PANTHER UPF0041 BRAIN PROTEIN 44-RELATED 190 258 - -
Ssu1g2999 273 SUPERFAMILY Chlorophyll a-b binding protein 79 251 - -
Ssu1g2999 273 Gene3D Chlorophyll a/b binding protein domain 56 135 - -
Ssu1g2999 273 Gene3D Chlorophyll a/b binding protein domain 136 243 - -
Ssu1g2999 273 PANTHER PHOTOSYSTEM II SUBUNIT S 1 183 - -
Ssu1g2999 273 PANTHER PHOTOSYSTEM II SUBUNIT S 190 258 - -
Ssu1g2999 273 Pfam Chlorophyll A-B binding protein 85 217 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2999 Ssu-Chr1 78696137 78698165 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2999 K03542 - gmx:100807355 415.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2999 1 78696137 78698165 Ssu1g2999 1 78696137 78698165 ECH