Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2998 ATGATGGAGAAAAATAGATGGTTATGGGAGAGGAAATCTTCTGGTGAAACTGAAAGTTCAAGGTCTGCATCATCTCATTCTGAGAAGCAACCAGATGAAGAGCACGAGGCATTGAATGAATCTCCTATTGGACATAATCAATCACCTGATGTCACCTCAACAGCTGTGGCCAGGTCCGAAGATATTAATGATATGTCATTTATCGATGAACAATCACTTGAAGTCACCTCACATACAACAGACAAGGTAAATAATGGTTTATTGGAGGAAGATGAAAATGGAGCAAAGGGTAATAAGATTATAAAGGATGGAGATGTAACTGATGGATTGAGGAACATGTCAGAAAAGCTATCTGCTGCGCTTGTGAATGTAAGTGCCCAAGAAGATTTGGTCAAGCAACATGCCAAAGTTGCTGAAGAAGCTATTGCAGGCTGGGAAAAGGCTGAAAATGAAGTGACAGGCTTAAAGAAGCAAGTCGAGGCACTGACTCTCAGAAATTCAACACTGGAAGATCGAGTCACCCATTTGGACACTGCACTTAAGGAGTGTGTTAGGCTGCTAAGACAAACAAGAGAAGAGCAGGAGCAAAATATTCATGATGCTGTATTAAAGAAAACACATGAGTTGGAATCAGCCAAAACTAAACTTGAGGAGCAGCTCATGGAGCTGCAGACGCAGAGCAAATCAGATGCCTCTAATGCTAGTTCTCCTTCATCAATTGATTTTGATGTGTGCCAGAAGGTTGAATATTTGGAGAAAGAGAACATGGCTCTCAAACATGAGCTCCAAGTTCAATCTGAAAAGCTGAAAATCAGGACAATCGAGAGGGATTTAAGCACCCAAACAGCTGAGATGGCTAGCAAGCAACATTTAGAAAGCATCAATAAAGTGGCCAAGCTTGAGGCTGAGTGCCGGAGACTGAAAAGCATGGCTTGTAGAGCTTCCATTACATCATCCTCATTTTGTGTTGAATCTTTCAAAGATGGTCAATCAGACAGTGGAGAGAGGACTAGTGCAATGGAGATTGATACCTGCAAGAAGAGTGGCTCAGAACCAGACGTGTGTGAGTCAAGTTGTTCTGACTCATGGGCATCCGCACTAATTGCTGAGCTTGATCAGTTCAAGAATGAAAAGTACAAACAAATTCCATCTGGTTCTGTTAACATTGATCTCATGGATGATTTTCTTGAAATGGAACGACTTGCAGCACTGCCTGATACCAAGAATGAAAGCGTTATCCAGGAGTCACTTGTTGCCAATCAATGCATTCGTGAAGAGAACTCCATCAGAGAAGAGTTTGGCGTTACGAATCGGCAAATGGATGAACTAAAAGAGAAGTTAGAGAAAGCCAAAGCAGAGAAAGATGAAGTGAAGATATGTCTAATGAAAAGTGGGTGTGTTATTGAGGCATCACAACTTCAAATGAGGGAGGCAGAAACAAAATTGGAGGAGTTACAAAGAGAGCTAGAGAATGCCTACAAATCAAAGCAAGTGTTAGAAAATGAACTAATGAGCATGCAGGCCGAGGCTCAATCAATAACTGCAAAGGTTCACTTATTAGAAGCAGAAGTTGATAAGGAAAAGGCTATGTCGGTTGAAATTGCAAATAAGTGTAAGGAACTGGAGGAAGAGCTAGAAAgaaagaagcaagaagagaaaCTCGGGTCAATAACCAGCTCATATGGTGAAATGAAGCTAAAGCAGGAGGACCTAGCACTAGCTGCAGGAAAGCTTGCTGAGTGCCAGAAAACAATAGCATCTTTGGGGAATCAATTAAGTTCACTAGCAACACTAGAAGATTTCCTGATTGACACTACCAGCATTCCAGAGTTTTCTGCAAGTCCATCACTCATTGCTAGAGCTGGTGGAGACATGTGGAAGTTGCATTCAAAAGACACATACTCAACTAAAAGAGATTCCGGTTCTTCAAGGTCCGGTCCACCCTTAAACAAAAACGAAGAAAGCTCACCACCCTCATCAACCAACTTGCCAAAGCATGACAGTTCTGAGAAGAGTAGAAATGGTTTTGCAAAATTTCTCTCTCAAACCGAGAGTGGAATCCAACTAGAGATTTAG 2076 0.4133 MMEKNRWLWERKSSGETESSRSASSHSEKQPDEEHEALNESPIGHNQSPDVTSTAVARSEDINDMSFIDEQSLEVTSHTTDKVNNGLLEEDENGAKGNKIIKDGDVTDGLRNMSEKLSAALVNVSAQEDLVKQHAKVAEEAIAGWEKAENEVTGLKKQVEALTLRNSTLEDRVTHLDTALKECVRLLRQTREEQEQNIHDAVLKKTHELESAKTKLEEQLMELQTQSKSDASNASSPSSIDFDVCQKVEYLEKENMALKHELQVQSEKLKIRTIERDLSTQTAEMASKQHLESINKVAKLEAECRRLKSMACRASITSSSFCVESFKDGQSDSGERTSAMEIDTCKKSGSEPDVCESSCSDSWASALIAELDQFKNEKYKQIPSGSVNIDLMDDFLEMERLAALPDTKNESVIQESLVANQCIREENSIREEFGVTNRQMDELKEKLEKAKAEKDEVKICLMKSGCVIEASQLQMREAETKLEELQRELENAYKSKQVLENELMSMQAEAQSITAKVHLLEAEVDKEKAMSVEIANKCKELEEELERKKQEEKLGSITSSYGEMKLKQEDLALAAGKLAECQKTIASLGNQLSSLATLEDFLIDTTSIPEFSASPSLIARAGGDMWKLHSKDTYSTKRDSGSSRSGPPLNKNEESSPPSSTNLPKHDSSEKSRNGFAKFLSQTESGIQLEI 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2998 691 MobiDBLite consensus disorder prediction 1 40 - -
Ssu1g2998 691 Coils Coil 145 172 - -
Ssu1g2998 691 MobiDBLite consensus disorder prediction 639 665 - -
Ssu1g2998 691 MobiDBLite consensus disorder prediction 41 55 - -
Ssu1g2998 691 MobiDBLite consensus disorder prediction 674 691 - -
Ssu1g2998 691 Coils Coil 468 554 - -
Ssu1g2998 691 Coils Coil 176 204 - -
Ssu1g2998 691 Coils Coil 433 460 - -
Ssu1g2998 691 MobiDBLite consensus disorder prediction 1 55 - -
Ssu1g2998 691 Pfam Filament-like plant protein, long coiled-coil 244 310 IPR008587 -
Ssu1g2998 691 Pfam Filament-like plant protein, long coiled-coil 419 597 IPR008587 -
Ssu1g2998 691 Pfam Filament-like plant protein, long coiled-coil 356 417 IPR008587 -
Ssu1g2998 691 Pfam Filament-like plant protein, long coiled-coil 127 226 IPR008587 -
Ssu1g2998 691 Coils Coil 248 268 - -
Ssu1g2998 691 PANTHER FILAMENT-LIKE PLANT PROTEIN 1-RELATED 2 499 - -
Ssu1g2998 691 PANTHER FILAMENT-LIKE PLANT PROTEIN 1-RELATED 494 690 - -
Ssu1g2998 691 Coils Coil 206 229 - -
Ssu1g2998 691 MobiDBLite consensus disorder prediction 632 691 - -
Ssu1g2998 691 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 2 499 - -
Ssu1g2998 691 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 494 690 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2998 Ssu-Chr1 78669982 78673437 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2998 - - gmx:100783676 1041.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2998 1 78669982 78673437 Ssu1g2998 1 78669982 78673437 ECH