Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2995 ATGCAAAACACGGTGAGAATTCAAAAGCAGCGTGTGGAAGGAACATCTGCCACGTGTGCGACCGCGGAGTCCACGCTGGTCCACGTGGCGTCCCTCAGAAGGCCAACCGAGATCGCGCGGAACGCTAGCCTCTTATCAACAAGATCCTCAAAACGACGTTGCCGAGGTTtcttccctctttctctctccagaGACTGCCAGCTTCGCATCGCCATGAACGCCATAGCAACTGCCGCAGTTCTCTCTCTCCCATTCTCCTTCTGTAGATCTTCCAAACTTGACGCTAAAAAGGGTTTGAAAGGTCGGTTTAGGGTGTTTGCTGTATATAGAGAAGAGGTAGCTAAGAAGCATGCATGGAGTGCGCTCTTTGATGTAGAGGATCCAAGATCTAAAGTGCCGCAGTATAAAGGGAAGTTTTTGGATGTATATCAAGCCCTTGAAGTGGCAAGATATGATATTCAATACCTTGATTGGCGAGCTCGGCAAGACTTGCTTACCATCATGCTTCTCCATGaaaaggtggtggaggtTCTTAATCCTTTAGCTCGTGATTATAAGTCCATTGGCACCATGAAAAAGGAGCTAGCGGGGTTGCAGGAAGAACTAGCACAAGCACACAGACAGGTTCATATATCTGAGGCAAGGGTGTCTGCTGCTTTAGATAAACTAGCTTACATGGAAGAATTGGTAAATGATAAGTTGTTGCAAGAAAGAGGCACAACTGAAGTTTCCCAGACATCCTGTTCTCCCAGCACTTCTTTTAAGTCTGTAGATATAGAAAAGAGAAGACCGCCACGAAAAAGCTTGGACGTATCAGGTCCAGTTCAGTCATACCACCCCCACTTGAAGAATTTCTGGTATCCTGTAGCTTTCTCTACTGACTTGAAGGATGATACAATGATCCCAATAGAATGTTTTGAGGAACCATGGGTCATCTTCAGAGGGAAAGATGGGAAGCCCGGATGTGTTCAGAACACCTGTGCACACAGAGCATGTCCTCTGCACCTTGGTTCTGTAAATGACGGTCGTATCCAATGTCCTTACCATGGCTGGGAATATACTACTGACGGAAAATGTGAGAAAATGCCATCTACTCGACTGCTAGATGTGAAGATAAAGTCATTGCCATGTTTTGAAAAGGAGGGGATGATCTGGATTTGGCCTGGCAATGACCCCCCAACAGCTACCCTTCCATCTTTGCTACCTCCATCTGGGTTTGAAGTGCATGCTGAGATTGTCATGGAGCTTCCAGTCGAACATGGGTTACTTTTGGACAACCTTTTGGATCTTGCACATGCCCCTTTTACTCACACTTCAACTTTTGCTAAGGGATGGAGTGTTCCCAGCTTGGTGAAATTTTTGACACCTGAATCTGGACTACAAGGATACTGGGATCCCTATCCAATTGATATGGAGTTTCGGCCACCTTGCATGGTTCTATCAACTATTGGAATTTCGAAGCCTGGTAAACTTGAAGGACAAAACACCAGTCAATGCGCCACACACTTGCATCAACTTCATGTCTGCTTACCAtcttcaaaacaaaaaacaagatTGCTATACAGAATGTCCCTGGATTTCGCTCCTGTGCTTAAGCATTTTCCTTTTATGCAACATCTATGGAGACATTTTGCAGAGCAGGTTTTAAATGAGGATCTACGGTTAGTGGTAGGCCAGCAAGAGCGGATGATCAAAGGTGCAAATGTGTGGAACTCCCCAGTATCCTATGACAAGCTTGGGGTAAGGTACAGACTATGGAGAGATGCCTTGGAGCAAGGAGCTAAGCAACTACCCTTCAgcaaatag 1806 0.443 MQNTVRIQKQRVEGTSATCATAESTLVHVASLRRPTEIARNASLLSTRSSKRRCRGFFPLSLSRDCQLRIAMNAIATAAVLSLPFSFCRSSKLDAKKGLKGRFRVFAVYREEVAKKHAWSALFDVEDPRSKVPQYKGKFLDVYQALEVARYDIQYLDWRARQDLLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAGLQEELAQAHRQVHISEARVSAALDKLAYMEELVNDKLLQERGTTEVSQTSCSPSTSFKSVDIEKRRPPRKSLDVSGPVQSYHPHLKNFWYPVAFSTDLKDDTMIPIECFEEPWVIFRGKDGKPGCVQNTCAHRACPLHLGSVNDGRIQCPYHGWEYTTDGKCEKMPSTRLLDVKIKSLPCFEKEGMIWIWPGNDPPTATLPSLLPPSGFEVHAEIVMELPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLTPESGLQGYWDPYPIDMEFRPPCMVLSTIGISKPGKLEGQNTSQCATHLHQLHVCLPSSKQKTRLLYRMSLDFAPVLKHFPFMQHLWRHFAEQVLNEDLRLVVGQQERMIKGANVWNSPVSYDKLGVRYRLWRDALEQGAKQLPFSK 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2995 601 Gene3D - 280 402 IPR036922 GO:0051537
Ssu1g2995 601 PANTHER CHLOROPHYLLIDE A OXYGENASE, CHLOROPLASTIC-LIKE 140 601 - -
Ssu1g2995 601 SUPERFAMILY ISP domain 279 393 IPR036922 GO:0051537
Ssu1g2995 601 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 286 386 IPR017941 GO:0051537
Ssu1g2995 601 SUPERFAMILY Bet v1-like 382 593 - -
Ssu1g2995 601 CDD Rieske_RO_Alpha_Cao 269 397 - -
Ssu1g2995 601 Pfam Pheophorbide a oxygenase 473 568 IPR013626 GO:0010277
Ssu1g2995 601 ProSitePatterns Bacterial ring hydroxylating dioxygenases alpha-subunit signature. 327 349 IPR015881 GO:0005506|GO:0051537
Ssu1g2995 601 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 140 601 - -
Ssu1g2995 601 MobiDBLite consensus disorder prediction 240 255 - -
Ssu1g2995 601 Pfam Vanillate O-demethylase oxygenase C-terminal domain 419 443 IPR044043 GO:0016491
Ssu1g2995 601 Pfam Rieske [2Fe-2S] domain 286 367 IPR017941 GO:0051537
Ssu1g2995 601 Coils Coil 188 215 - -
Ssu1g2995 601 MobiDBLite consensus disorder prediction 240 273 - -
Ssu1g2995 601 Gene3D - 408 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2995 Ssu-Chr1 78653190 78657551 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2995 K13600 - gmx:100806298 1020.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2995 1 78653190 78657551 Ssu1g2995 1 78653190 78657551 ECH