Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2989 ATGACCTTTGCAAAGCATacaaatcaattatcaaaagatGGTTTCGTCGTAACAAGGAATCATCATCATCCTCTAGCGGAGGAACCTACTCAAGATGACAAAACCACGAATGGAATTCACTGCTTTAGATTGAATGGCGATGATTTGAGGGGCAATGATGATGATCATCCAATGAGTTCAAGAGGATGTTGTTTATATAGGCATAGAAGCTTAGATAGTTCGTGTTTTCCTTCCATGAATTCTGTGTCTAGAAATGCAAGCAGAAAGATTAATCAAGCCTCAAGCAAGAGCTACGATTTTATGCCTACCCCTTCTTCATTGAACAGAAGCGAAAGTTTGAAAAAGCCTCCTCATCTGCCCTCAGGGAATGCCAACCGCAGGAGCAACACTCCAATCATGTATTCCAATTCATCTGGGATGCTAAAACCCCCTCCAATTGAGAAAAAACTACAATGCACTCTGGAAGAGTTGTGCTATGGGTGCAAGAAAAAGATCATGATCACAAGGGATGTCCTCACAGATACAGGGGGAATAGTTCAAGAGGAAGAATTGCTAACGATAAATGTACAGCCTGGATGGAAGAAAGGAACAAAGATTACATTTGAAGGAAAAGGGAATGAGAGACTAGGTGCATACCGagaagatataatatttatcatcTCCGAGAAAAGACACCATTTATTTAGAAGAGAAGGGGATGATTTGGAACTGGGGGTAGAAATTCCCTTAGTAAAGGCACTTACTGGCTGTATAATATTAGTACCACTATTGGGTGGAGAGCACATAAATTTGACACTTGACAATATCATATGCCCTGGCTATGAGAAGATCATCCCTGGCCAAGGTATGCCAATCTCCAAAGAACCAGGGAAGAGAGGAAACttgaaaattacatttctaGTTGTGTTTCCAACACAACTCACAGGTAATCAAAGATCAGAGGCTGTTCGTATTTTACAGGATTCTTGA 969 0.3922 MTFAKHTNQLSKDGFVVTRNHHHPLAEEPTQDDKTTNGIHCFRLNGDDLRGNDDDHPMSSRGCCLYRHRSLDSSCFPSMNSVSRNASRKINQASSKSYDFMPTPSSLNRSESLKKPPHLPSGNANRRSNTPIMYSNSSGMLKPPPIEKKLQCTLEELCYGCKKKIMITRDVLTDTGGIVQEEELLTINVQPGWKKGTKITFEGKGNERLGAYREDIIFIISEKRHHLFRREGDDLELGVEIPLVKALTGCIILVPLLGGEHINLTLDNIICPGYEKIIPGQGMPISKEPGKRGNLKITFLVVFPTQLTGNQRSEAVRILQDS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2989 322 CDD DnaJ_C 144 307 - -
Ssu1g2989 322 SUPERFAMILY HSP40/DnaJ peptide-binding domain 145 225 IPR008971 GO:0006457|GO:0051082
Ssu1g2989 322 MobiDBLite consensus disorder prediction 122 137 - -
Ssu1g2989 322 PANTHER FAMILY B PROTEIN, PUTATIVE-RELATED 30 320 - -
Ssu1g2989 322 Gene3D - 142 224 - -
Ssu1g2989 322 Gene3D - 225 305 - -
Ssu1g2989 322 MobiDBLite consensus disorder prediction 81 112 - -
Ssu1g2989 322 SUPERFAMILY HSP40/DnaJ peptide-binding domain 228 312 IPR008971 GO:0006457|GO:0051082
Ssu1g2989 322 MobiDBLite consensus disorder prediction 81 141 - -
Ssu1g2989 322 Pfam DnaJ C terminal domain 146 304 IPR002939 -
Ssu1g2989 322 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 30 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2989 Ssu-Chr1 78538734 78540811 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2989 K09519 - gmx:100782604 452.981