Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2985 ATGTCTACCAAGCCCATAAATTTTCAAAGCTTCTTCAGAGGAACGATGGCGGGTAGGATTTCGATTTGTTTCCTCTTCCTGTTCGCATTCTCTCTCCTTGCATCGCTTTCTTCTCAGACCTCTGCTGACGAATCGGAGGTGAAGGAGTTCGTTCTCACATTGGATCACTCCAACTTCTCGGACACTGTCGACAAGCACAACCTCATCGTCGTCGAGTTCTACGCACCATGGTGTGGCCACTGTAAGAAGCTTGCTCCGGAGTATGAAAAAGCTGCTTCTATCTTGAGTAGTCATGATCCTCCGGTTGTTTTGGCTAAAATTGATGCCGATGATGAGAAGAACAGAGACCTTGCATCGGAATTTGAAGTTAGGGGATACCCAACAATTAAGATTCTGAGAAATGGGGGAAAGAATGTTCAAGAATACAAAGGTCCCTATGAAGCAGATGGCATCGTTGACTATTTGAAGAAACAAAGTGGTCCTGCTTCAACTGAAATTAAGTGTGTTGATGATGCTACTGCTGTTATTGGTGAAAATAAAGTTGCTATTGTTGGAGTGTTTCCAGGATTTTCTGGGGAGGAGTTTGATAACTATACTCTATTAACAGAGAAGTTGCGTGCTGACTATGACTTTGGTCACACTTTAAATGCCAAACACCTTCCAAGAGGAGAATCATCAGTCGCTGGGCCCATAGTTAGGTTATTCAAGCCATTCGACGAACTTTTTGTTGACTTCCAGGATTTCCATGTGGAAGCTCTAGAGAAATTTGTTGAAGAATCTAGTGTCCCTGTTGTGACTGTCTTTAACAATGATCTGAGTAATTACCCTTTTGTTGTCAAATACTTCAGCAGCCCCAATACAAAGGTAATGTTGTTTATCAACTTCACTGCTGAGGGTGCTGAatctttcaaatcaaaataccGAGAAACTGCTGAGCAATATAGACAACAGGGTGTAAGCTTTCTGGTGGGAGATGTTAAGTTTACTAAGGGTCATTTCCAGTATTTTGGAGTGAAGGAAGACCAAGTACCTCTAATTATCATACAACATAGTGACgggaagaaatattttaaaccCAATATGGAACCTGATCACATTTCAACTTGGTTCAAGGCATACAAgGACGGAAATATTGCACCATATCTGAAATCTGAACCTATTCCTGAAGCTAACAATGAACCTATTAAAGTGGTAGTTGGGGGCAGTCTTCAGGACATATTTTTCAACTCTGGGAAGAATGTTCTGCTGGAGTTTTATTCTGCCTGGTGTGGTTATTGCACAGAGTTGGCTCCAATGTTGGAGGAAGTTGCTGTCTCATATCAAAGTGATGCTGATGTTATTATTGCGAAACTGGATGGAATTGCCAACGATATCCCAAGTGAAACCTTTGAAGTCAAAGGTTATCCAATTGTGTACTTCAGGTCAGCGAGTGGAAAGATATCAAAATACGATGGCAATAGGACCAAGGAAGACATCATAGAATTCATTGAAAAGAACAGGGATAAACCTGCTCAGCAAGAACAACGAAAAGATGAGCAAGAAAAACGAAAAGATGAGCTTTGA 1563 0.4044 MSTKPINFQSFFRGTMAGRISICFLFLFAFSLLASLSSQTSADESEVKEFVLTLDHSNFSDTVDKHNLIVVEFYAPWCGHCKKLAPEYEKAASILSSHDPPVVLAKIDADDEKNRDLASEFEVRGYPTIKILRNGGKNVQEYKGPYEADGIVDYLKKQSGPASTEIKCVDDATAVIGENKVAIVGVFPGFSGEEFDNYTLLTEKLRADYDFGHTLNAKHLPRGESSVAGPIVRLFKPFDELFVDFQDFHVEALEKFVEESSVPVVTVFNNDLSNYPFVVKYFSSPNTKVMLFINFTAEGAESFKSKYRETAEQYRQQGVSFLVGDVKFTKGHFQYFGVKEDQVPLIIIQHSDGKKYFKPNMEPDHISTWFKAYKDGNIAPYLKSEPIPEANNEPIKVVVGGSLQDIFFNSGKNVLLEFYSAWCGYCTELAPMLEEVAVSYQSDADVIIAKLDGIANDIPSETFEVKGYPIVYFRSASGKISKYDGNRTKEDIIEFIEKNRDKPAQQEQRKDEQEKRKDEL 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2985 520 PRINTS Thioredoxin family signature 69 77 - -
Ssu1g2985 520 PRINTS Thioredoxin family signature 77 86 - -
Ssu1g2985 520 PRINTS Thioredoxin family signature 122 133 - -
Ssu1g2985 520 Gene3D Glutaredoxin 36 157 - -
Ssu1g2985 520 Pfam Thioredoxin-like domain 191 371 - -
Ssu1g2985 520 SUPERFAMILY Thioredoxin-like 361 501 IPR036249 -
Ssu1g2985 520 PANTHER PROTEIN DISULFIDE-ISOMERASE 26 513 - -
Ssu1g2985 520 SUPERFAMILY Thioredoxin-like 164 263 IPR036249 -
Ssu1g2985 520 MobiDBLite consensus disorder prediction 495 520 - -
Ssu1g2985 520 ProSiteProfiles Thioredoxin domain profile. 373 501 IPR013766 -
Ssu1g2985 520 Gene3D Glutaredoxin 264 388 - -
Ssu1g2985 520 CDD PDI_b'_family 280 374 - -
Ssu1g2985 520 ProSiteProfiles Thioredoxin domain profile. 27 160 IPR013766 -
Ssu1g2985 520 Coils Coil 503 520 - -
Ssu1g2985 520 SUPERFAMILY Thioredoxin-like 260 392 IPR036249 -
Ssu1g2985 520 CDD PDI_b_family 163 259 - -
Ssu1g2985 520 Gene3D Glutaredoxin 158 263 - -
Ssu1g2985 520 Pfam Thioredoxin 51 157 IPR013766 -
Ssu1g2985 520 Pfam Thioredoxin 408 498 IPR013766 -
Ssu1g2985 520 CDD PDI_a_PDI_a'_C 394 496 - -
Ssu1g2985 520 TIGRFAM pdi_dom: protein disulfide-isomerase domain 55 158 IPR005788 GO:0003756
Ssu1g2985 520 Gene3D Glutaredoxin 389 500 - -
Ssu1g2985 520 CDD PDI_a_family 52 155 - -
Ssu1g2985 520 PANTHER PROTEIN DISULFIDE ISOMERASE 26 513 - -
Ssu1g2985 520 ProSitePatterns Thioredoxin family active site. 415 433 IPR017937 -
Ssu1g2985 520 SUPERFAMILY Thioredoxin-like 51 161 IPR036249 -
Ssu1g2985 520 ProSitePatterns Thioredoxin family active site. 70 88 IPR017937 -
Ssu1g2985 520 TIGRFAM ER_PDI_fam: protein disulfide isomerase 51 520 IPR005792 GO:0003756
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2985 Ssu-Chr1 78435531 78446021 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2985 K09580 - gmx:100170705 830.861