Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2984 ATGTTTCTCAAGTCCAGAAATTTTCAAAGCTTCTTCGGAGGAACGATGGCGGGTAGGGTTTCAATTTGCTTCCTCTTCGTGTTCGCACTCTCTCTTCTCGCGTTGCGTCCTTCTCAGATCTCTGCTGAGGAATCGGAAGTCAAGGAGGAGTTCGTTCTCACATTGGATCACTCAAACTTCCACGACACTATCAGCAAGCACAATTTCATTGTCGTGGAGTTCTACGCACCAtgGTGTGGCCACTGTAAGAAGCTTGCTCCCGAGTATGAAAAAGCTGCTTCTATCTTGAGTAGTCATGATCCTCCGGTTGTTTTGGCTAAAATTGATGCCAATGATGAGAAGAACAGAGACCTTGCATCGGAATATGATGTTAGGGGATACCCAACAATTAAGATTCTAAGAAATGGGGGAAAGAATGTTCAAGAATACAAAGGTCCCCGTGAAGCAGAAGGCATCGTTGACTATTTGAAGAAACAAAGTGGTCCTGCTTCAACTGAAATTAAATCTGCTGATGAAGCTACTGCTTTTATTGGTGAAAATAAAGTTGCTATTGTTGGAGTTTTTACGAAATTTTCTGGGGAGGAGTATGATAACTTTACTGCCTTAGCAGAGAAGTTGCGTGCTGACTATGACTTTGGTCACGCTCTGAATGCCAAACACCTTCCAAGAGGAGAATCATCAGTTACTGGGCCTGTAGTTAGGTTATTCAAGCCATTCGATGAACTTTTTGTTGACTTCCAGGATTTCCATGTGGAAGCTCTAGAGAAATTTGTTGAAGAATCTAGTATCCCTCTTGTTACTGTCTTTAACAATGATCCGAACAATCACCCTTTTGTTGCTAAATTCTTCAACAGTCCCAATGCAAAGGCAATGTTGTTCATCAACTTCACTGCTGAAGGTTCTGAatctttcaaatcaaaataccGTGAAGCTGCTGAGCAATATAGACAACAGGGTGTAAGTTTTCTGGTGGGAGATGTTGAGTCTAGTCAAGGTGCTTTCCAGTACTTTGGACTGAAGGAAGACCAAGTACCTGTAATTATGGTACAACATAATGATgggaagaaattttttaaacccAATTTGGAAGCTGATCACATTCTCACTTGGTTCAAGGCATACAAgGACGGTAATATTGCACCATATGTGAAGTCTGAACCTATTCCTGAAACTAACAATGAACCTGTTAAAGTGGTAGTTGGGGACAGTCTCCAGGACATTGTTTTCAACTCTGGGAAGAATGTTCTGCTGGAGTTTTATGCTCCCTGGTGTGGTCATTGCAAACAGTTGGCTCCAATATTGGAGGAAGTTGCTGTTTCATACCAAAGTGATGCTGATGTTATTATTGCAAAACTGGATGCAACTGCTAACGATATCCCAAGTGATACCTTTGAGGTCGAAGGTTATCCAACCGTGTACTTCAGGTCAGCAAGTGGAAAGATATCGCAATACGATGGCAATAGGACCAAGGAAGACATCATAGAATTCATTGAAAAGAACCGGGATAAACCTGCTCAGCAAGAACAGGGAAAAGATGAGCTTTGA 1545 0.4091 MFLKSRNFQSFFGGTMAGRVSICFLFVFALSLLALRPSQISAEESEVKEEFVLTLDHSNFHDTISKHNFIVVEFYAPWCGHCKKLAPEYEKAASILSSHDPPVVLAKIDANDEKNRDLASEYDVRGYPTIKILRNGGKNVQEYKGPREAEGIVDYLKKQSGPASTEIKSADEATAFIGENKVAIVGVFTKFSGEEYDNFTALAEKLRADYDFGHALNAKHLPRGESSVTGPVVRLFKPFDELFVDFQDFHVEALEKFVEESSIPLVTVFNNDPNNHPFVAKFFNSPNAKAMLFINFTAEGSESFKSKYREAAEQYRQQGVSFLVGDVESSQGAFQYFGLKEDQVPVIMVQHNDGKKFFKPNLEADHILTWFKAYKDGNIAPYVKSEPIPETNNEPVKVVVGDSLQDIVFNSGKNVLLEFYAPWCGHCKQLAPILEEVAVSYQSDADVIIAKLDATANDIPSDTFEVEGYPTVYFRSASGKISQYDGNRTKEDIIEFIEKNRDKPAQQEQGKDEL 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2984 514 CDD PDI_b_family 164 260 - -
Ssu1g2984 514 SUPERFAMILY Thioredoxin-like 52 162 IPR036249 -
Ssu1g2984 514 PANTHER PROTEIN DISULFIDE-ISOMERASE 19 509 - -
Ssu1g2984 514 CDD PDI_b'_family 281 375 - -
Ssu1g2984 514 ProSitePatterns Thioredoxin family active site. 71 89 IPR017937 -
Ssu1g2984 514 Gene3D Glutaredoxin 265 389 - -
Ssu1g2984 514 ProSiteProfiles Thioredoxin domain profile. 374 502 IPR013766 -
Ssu1g2984 514 Gene3D Glutaredoxin 160 264 - -
Ssu1g2984 514 Gene3D Glutaredoxin 390 504 - -
Ssu1g2984 514 CDD PDI_a_family 53 156 - -
Ssu1g2984 514 ProSitePatterns Thioredoxin family active site. 416 434 IPR017937 -
Ssu1g2984 514 ProSiteProfiles Thioredoxin domain profile. 31 161 IPR013766 -
Ssu1g2984 514 PRINTS Thioredoxin family signature 78 87 - -
Ssu1g2984 514 PRINTS Thioredoxin family signature 123 134 - -
Ssu1g2984 514 PRINTS Thioredoxin family signature 70 78 - -
Ssu1g2984 514 TIGRFAM pdi_dom: protein disulfide-isomerase domain 401 500 IPR005788 GO:0003756
Ssu1g2984 514 TIGRFAM pdi_dom: protein disulfide-isomerase domain 56 159 IPR005788 GO:0003756
Ssu1g2984 514 Pfam Thioredoxin 52 158 IPR013766 -
Ssu1g2984 514 Pfam Thioredoxin 397 499 IPR013766 -
Ssu1g2984 514 PANTHER PROTEIN DISULFIDE ISOMERASE 19 509 - -
Ssu1g2984 514 SUPERFAMILY Thioredoxin-like 261 393 IPR036249 -
Ssu1g2984 514 Pfam Thioredoxin-like domain 188 371 - -
Ssu1g2984 514 TIGRFAM ER_PDI_fam: protein disulfide isomerase 52 509 IPR005792 GO:0003756
Ssu1g2984 514 CDD PDI_a_PDI_a'_C 395 497 - -
Ssu1g2984 514 SUPERFAMILY Thioredoxin-like 363 501 IPR036249 -
Ssu1g2984 514 SUPERFAMILY Thioredoxin-like 165 264 IPR036249 -
Ssu1g2984 514 Gene3D Glutaredoxin 37 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2984 Ssu-Chr1 78421279 78426007 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2984 K09580 - gmx:100170705 917.146