Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2981 ATGAAAATCCGCAACCCCTCCTTCTTCTCCGCAATCCTACTCATATCAATCGCTCTCGCAAACTCGGCGTTTTCACTCACCGACGAGTTACCTTCCGCCGCCTACGACCGCGTGCTGTTCCCGGACCGGAGGTGCCAGAAGACGGTGTCGGAGAACAAGACGCGGCGAGGCGCGTCTGCGGCGGCGGCGGAGTGCGAGGTGTGGAGCGCGGCGTGTTCGGAGGCGGTGCTGAGCGTGGCGCGGCGGCCGGAGACGGCGGAGTGGCTGAGAGGTGTTCGCCGGAAGATCCACGCGAATCCAGAGCTGGCGTTTGAGGAAATCGAGACGAGTCGTTTGGTAAGAGAGGAGTTGGATCTGATGGAAGTTAGTTATCGGTACCCTCTCGCGAAGACCGGTATTCGAGCCTGGATCGGCACTGGGGGTCCGCCTTTTGTTGCGATCAGAGCTGACATGGACGCGCTTCCCATCCAGGAAGCTGTGGAATGGGAGTACAAGTCTAAAGTTGCCGGCAAAATGCATGCTTGTGGGCACGACGCACATGTGGCTATGCTTATCGGCGCTGCCAAGATCTTGAAAACTCGAGAGCATTTATTAAAGGGAACTGTAATTCTGTTATTCCAGCCAGCAGAGGAAGCTGGTAATGGAGCAAAACGAATGATGCAAGACGGTGCTTTGGAGGACGTGGAGGCTATATTTGCAGTTCATGTGTCCCATGAACATCCAACTGGTATAATTGGGTCCAGGCCTGGACCCCTCCTTGCTGGCTGTGGATTTTTCAGAGCTGTCATTAGTGGCAAAAAGGGCCTTGCTGCCAATCCTCACCGTTCTGTTGATCCAGTTTTGGCCGCTTCAGCTGCAGTCATCAGCTTACAGGGTATTGTCTCCCGCGAATCAAATCCACTGGATTCGCAGGTTGTCTCTGTAACTTCGTTTAATGGAGGCAACAATCTTGACATGATACCGGACACAGTGGTCCTCGGTGGAACTTTCAGAGCGTTCTCTAACACCAGCTTTTACCAGCTACTTGAAAGAATAGAGCAGGTGATTGTGGAACAGGCCAGTGTCTATAGATGCTTCGCAGAAGTTGACTTCTTTGAAAAGGAGTACACTATTTATCCCCCCACAGTTAATGATGACCGAATGTACGAGCATGTGAAGAAGGTGTCCATCGATTTGCTGGGTCAGAAGAAGTTCAGGGTAGTTCCACCTATGATGGGTGCTGAAGATTTCTCTTTCTACTCCGAGGTGGTTCCCTCAGCTTTCTTCTACATAGGGATAAGGAATGAAACACTGGGGTCCACTCATACGGGACACTCTCCACATTTCATGATTGATGAAGAAGTTCTACCAATAGGTGCTGCTGTTCATGCTAGTATTGCAGAGAGGTACCTCATTGAACATGGCTGA 1407 0.5174 MKIRNPSFFSAILLISIALANSAFSLTDELPSAAYDRVLFPDRRCQKTVSENKTRRGASAAAAECEVWSAACSEAVLSVARRPETAEWLRGVRRKIHANPELAFEEIETSRLVREELDLMEVSYRYPLAKTGIRAWIGTGGPPFVAIRADMDALPIQEAVEWEYKSKVAGKMHACGHDAHVAMLIGAAKILKTREHLLKGTVILLFQPAEEAGNGAKRMMQDGALEDVEAIFAVHVSHEHPTGIIGSRPGPLLAGCGFFRAVISGKKGLAANPHRSVDPVLAASAAVISLQGIVSRESNPLDSQVVSVTSFNGGNNLDMIPDTVVLGGTFRAFSNTSFYQLLERIEQVIVEQASVYRCFAEVDFFEKEYTIYPPTVNDDRMYEHVKKVSIDLLGQKKFRVVPPMMGAEDFSFYSEVVPSAFFYIGIRNETLGSTHTGHSPHFMIDEEVLPIGAAVHASIAERYLIEHG 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2981 468 Gene3D Zn peptidases 92 449 - -
Ssu1g2981 468 TIGRFAM amidohydrolases: amidohydrolase 90 452 IPR017439 GO:0016787
Ssu1g2981 468 CDD M20_IAA_Hyd 89 464 IPR044757 GO:0009850|GO:0016787
Ssu1g2981 468 Pfam Peptidase dimerisation domain 259 353 IPR011650 -
Ssu1g2981 468 Pfam Peptidase family M20/M25/M40 146 461 IPR002933 GO:0016787
Ssu1g2981 468 Gene3D - 254 372 - -
Ssu1g2981 468 PANTHER IAA-AMINO ACID HYDROLASE ILR1-LIKE 6 38 467 - -
Ssu1g2981 468 PANTHER PEPTIDASE M20 FAMILY MEMBER 38 467 IPR017439 GO:0016787
Ssu1g2981 468 SUPERFAMILY Zn-dependent exopeptidases 84 466 - -
Ssu1g2981 468 PIRSF Amidohydrol_AmhX 77 467 IPR017439 GO:0016787
Ssu1g2981 468 SUPERFAMILY Bacterial exopeptidase dimerisation domain 255 364 IPR036264 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2981 Ssu-Chr1 78274250 78283148 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2981 K21604 - gmx:100785666 840.106