Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2978 ATGGTGAAGGTGTGGTGGAGGTGGTTTTCTTCCTTTGCTCTCATTTTAACGGCGTTTATTGGCGCCGTCTATGGTGGCAATGTCACCTACGACGGAAGATCCTTAATCATTGATGGACAACATAAAATCCTCTTCTCCGGTTCAATTCATTATCCTCGCAGCACTCCTGAGATGTGGCCTAATTTAATTGCGAAAGCTAAGGAAGGTGGATTAGATGTCATACAAACTTACGTGTTTTGGAACCTTCACGAACCTCAACAAGGCCAGTATGACTTTAGGGGAAGGCGTAACATAGTAAGATTCATCAAGGAAATTCAAGCGCAAGGTTTATATGTAACCCTCCGAATTGGACCATACATTGAGAGTGAATGCACTTATGGGGGTCTACCGATATGGTTACATGATATTCCGGGTGTCGTATTCAGATCTGACAATGAGCAATTCAAGTTTCACATGCAAAGGTTCACAGCAAAAATAGTCAACATGATGAAATCAGCCAATCTTTATGCTTCACAAGGTGGACCTATCATACTATCGCAGATTGAGAACGAATATGGTATTGTTGAAGGGGCGTTTCACGAGAAAGGACTATCCTATATTCGTTGGGCTGCCCAAATGGCCGTGGGCCTCCAAACTGGTGTGCCTTGGGTAATGTGCAAGCAAGATAATGCTCCTGATCCGGTGATCAACACATGCAATGGCATGCAATGCGGGACAACTTTTAAGGGTCCTAACTCGCCTAACAAGCCTTCATTGTGGACAGAGAATTGGACAAGTTTTTACCAAGTCTTTGGTGGAGTACCGTACTTAAGATCAGCTGAAGACATTGCGTATAATGTTGCCTTGTTTATTGCAAAGAGAGGAAGCTATGTCAATTACTACATGTACCATGGAGGAACCAATTTCGACAGGATAGCGTCTGCTTTCGTAATAACGGCCTATTATGACGAAGCTCCACTGGATGAATATGGTTTGGTTAGGGAACCAAAATGGGGCCATCTTAAGGAGCTACATGCGGCAATCAAGTCATGTTCAAAACCTCTACTTTATGGAACTCAAACTAGGTTCAGCTTGGGATCACAACAAAACGCTTATGTTTTCAAAAGGAGCTCAATAGAATGTGCTGCCTTCCTGGAAAATAGTGAAGATCGGAGTGTCACAatccaatttcaaaatattccaTATCAATTACCCCCCAAATCAATCAGTATTCTACCAGACTGCAAGCATGTAGCCTTCAACACTGCCAAGGTAAGCACACAAAACAATGCCAGAGAAATGAAATCACATTTACAGTTCAATTCAGCTGAAAAATGGAAAGTGTACAAAGAAGCCATCCCCAGCTTTGACGATACTTCATTAAAAGCAGATACACTATTAGATCAAATCAGCACAGCAAAAGATACATCTGACTATATGTGGTACACATTCAGGCTTTATGACAACTCTCCTAATGCTCAATCCATTCTTAGTGCATACAGCCAAGGGCAATGTTTTGCATGCCTTTGTCAATGGAAATTTAGTAGGTTCTGCACACGGAAGTCACAAAAATGTATCTTTTGTCATGGAGaacaaactcaatcttataaacGGGATGAACAATATTTCTTTCCTCAGTGCAACAGTTGGATTGCCGGTAATTGTCTCAGTTGTTAg 1656 0.41 MVKVWWRWFSSFALILTAFIGAVYGGNVTYDGRSLIIDGQHKILFSGSIHYPRSTPEMWPNLIAKAKEGGLDVIQTYVFWNLHEPQQGQYDFRGRRNIVRFIKEIQAQGLYVTLRIGPYIESECTYGGLPIWLHDIPGVVFRSDNEQFKFHMQRFTAKIVNMMKSANLYASQGGPIILSQIENEYGIVEGAFHEKGLSYIRWAAQMAVGLQTGVPWVMCKQDNAPDPVINTCNGMQCGTTFKGPNSPNKPSLWTENWTSFYQVFGGVPYLRSAEDIAYNVALFIAKRGSYVNYYMYHGGTNFDRIASAFVITAYYDEAPLDEYGLVREPKWGHLKELHAAIKSCSKPLLYGTQTRFSLGSQQNAYVFKRSSIECAAFLENSEDRSVTIQFQNIPYQLPPKSISILPDCKHVAFNTAKVSTQNNAREMKSHLQFNSAEKWKVYKEAIPSFDDTSLKADTLLDQISTAKDTSDYMWYTFRLYDNSPNAQSILSAYSQGQCFACLCQWKFSRFCTRKSQKCIFCHGEQTQSYKRDEQYFFPQCNSWIAGNCLSC 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2978 551 Gene3D Glycosidases 23 345 - -
Ssu1g2978 551 SUPERFAMILY (Trans)glycosidases 25 344 IPR017853 -
Ssu1g2978 551 PANTHER BETA-GALACTOSIDASE RELATED 11 508 IPR001944 GO:0004553|GO:0005975
Ssu1g2978 551 Pfam Glycosyl hydrolases family 35 34 340 IPR031330 -
Ssu1g2978 551 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 173 185 IPR019801 GO:0004553|GO:0005975
Ssu1g2978 551 PANTHER BETA-GALACTOSIDASE 11 508 - -
Ssu1g2978 551 PRINTS Glycosyl hydrolase family 35 signature 289 304 IPR001944 GO:0004553|GO:0005975
Ssu1g2978 551 PRINTS Glycosyl hydrolase family 35 signature 252 267 IPR001944 GO:0004553|GO:0005975
Ssu1g2978 551 PRINTS Glycosyl hydrolase family 35 signature 171 186 IPR001944 GO:0004553|GO:0005975
Ssu1g2978 551 PRINTS Glycosyl hydrolase family 35 signature 114 133 IPR001944 GO:0004553|GO:0005975
Ssu1g2978 551 PRINTS Glycosyl hydrolase family 35 signature 59 77 IPR001944 GO:0004553|GO:0005975
Ssu1g2978 551 PRINTS Glycosyl hydrolase family 35 signature 308 324 IPR001944 GO:0004553|GO:0005975
Ssu1g2978 551 PRINTS Glycosyl hydrolase family 35 signature 38 55 IPR001944 GO:0004553|GO:0005975
Ssu1g2978 551 Pfam Beta-sandwich domain in beta galactosidase 348 418 IPR041392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2978 Ssu-Chr1 78166703 78173441 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2978 14 498 Glycoside Hydrolase AT5G63800 64.213 0.0 674
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2978 - - pvu:PHAVU_009G127500g 945.266