Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2974 ATGCATTCAGATTGGTTTTCTCCTGCCTCGGTGCATAGGTTGGAAAGGCAAGCGGTGCCGCATTTCTTTTCAGGGAAATCGCCGGATCATACTCCGGAGAAGTACATGGAGTGTAGGAACTGCATTGTTGCGCTGCACATGGAGGAACCCAGGAAGAGGATTACCGTTTCTGATTGCCAGGGTTTGTTGGCTGGGGTTGATGTTGAAGATTTGACTCGGATTTTTCGGTTCCTTGATCATTGGGGAATTATTAATTACTGTGTTCGGATGCCGAGTCATGAGTCTTCCAATGCTGTCTCTTGCCTACGGGAGGAGCAGAGTGGAGAGGTCCGTGTGCCGTCGGAGGCTTTGAAATCTATAGATAGTTTGATCAAATTTGACAAGCCCAAGTGTAAGCTGAAAGCAGACGAAATTTATTCGTCATTGACTGCACATAATGCCGATGTCCTTGATCTGGAGGACAGAATAAGAGAGCATCTATCGGAGAATCATTGCAATTGTTGTTCTCGTCCTCTTCCTGTTGTATACTATCAGTCTCAAAAAGAGGTTGATACTTTACTCTGCACTGATTGCTTTCATGATGGGAGATTTGTCATTGGTCATTCAAGTATAGATTTTATAAGGGTGGATTTGACAAGGGATTATGGTGAACTAGATGGGGATAGTTGGACTGATCAAGAAACTTTGCTGCTGCTTGAAGCAATGGAGATTTACCATGAGAATTGGAATGAAATTGCTGAGCATGTTGGTACCAAGTCAAAAGCACAATGCATTCTTCATTTTCTCCGTCTACCCATGGAAGATGGaaaattggaaaatattaaTGTTCCAAGCATGTCTTTGTCATCCAATGTGATGAATAGAGATGATAGTGGAAGGCAGCATTGTTACTCAAATGGAGATACTGCAGGACCTGTCCATCAAATCAGAGATTCTGACAGCCGGCTTCCTTTTGCAAATTCTGGAAATCCTGTTATGGCTTTGGTTGCCTTTTTAGCCTCCGCGGTTGGACCAAGAGTAGCTGCTTCTTGTGCTCATGCAGCATTAGCAGTATTGTCAGAGGATAATTCTGGCAGCACGTCACAGATGGAAGCACCAGGACATGATAATAGGACAAATCCAGAAAGCACACATAGTCGAGATGGTGGTCCTCATGGAGAAACAGCAATTTCAAATAATCATAATGATGACAAGGCAAAAGGACTTGGTTCATGGGGTCTAAATGAGGGCAGGACAACCCCACTCTCAGCTGAGAAAGTTAAAGATGCAGCTAAAGCAGGCCTTTCTGCTGCAGCAATGAAAGCAAAATTATTTGCGGATCATGAAGAACGGGAAATTCAGAGATTATGTGCTAATATAGTTAATCATCAGCTGAAAAGATTGGAATTGAAGCTGAAGCAGTTTGCAGAAATTGAAACATTGTTGATGAAAGAATGCGAACAACTGGAGAGAACAAAGCAGAGGTATGCTGCTGAACGGACCCGCATAATATCAGCACGTCTTGGAACTGCAGGAGCTTCACCTACAATGAATGCATCAGGTGTTGGTCCTTCGATGGCTAGTAATGGAAACAATAGGCAACAAATGATCTGTGCTTCTCCCTCACAGCCCAGCATCTCAGGGTATGGCAACAACCAACCAGTTCATCCACATATGTCCTTTGCCCCACGACCTTCAATGTTTGGGTTGGGGCAAAGATTGCCCCTATCTATGATACAGCAATCACAATCAACTTCTTCAACTGCCATGTTCAATGCCCCTAGTAATGTGCAGCCCACTACCAATCATCCATTGTTGAGGCCTGTATCAGGAACTAACTCTGGTTTAGGTTAA 1833 0.4359 MHSDWFSPASVHRLERQAVPHFFSGKSPDHTPEKYMECRNCIVALHMEEPRKRITVSDCQGLLAGVDVEDLTRIFRFLDHWGIINYCVRMPSHESSNAVSCLREEQSGEVRVPSEALKSIDSLIKFDKPKCKLKADEIYSSLTAHNADVLDLEDRIREHLSENHCNCCSRPLPVVYYQSQKEVDTLLCTDCFHDGRFVIGHSSIDFIRVDLTRDYGELDGDSWTDQETLLLLEAMEIYHENWNEIAEHVGTKSKAQCILHFLRLPMEDGKLENINVPSMSLSSNVMNRDDSGRQHCYSNGDTAGPVHQIRDSDSRLPFANSGNPVMALVAFLASAVGPRVAASCAHAALAVLSEDNSGSTSQMEAPGHDNRTNPESTHSRDGGPHGETAISNNHNDDKAKGLGSWGLNEGRTTPLSAEKVKDAAKAGLSAAAMKAKLFADHEEREIQRLCANIVNHQLKRLELKLKQFAEIETLLMKECEQLERTKQRYAAERTRIISARLGTAGASPTMNASGVGPSMASNGNNRQQMICASPSQPSISGYGNNQPVHPHMSFAPRPSMFGLGQRLPLSMIQQSQSTSSTAMFNAPSNVQPTTNHPLLRPVSGTNSGLG 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2974 610 Coils Coil 439 459 - -
Ssu1g2974 610 ProSiteProfiles SANT domain profile. 218 269 IPR017884 -
Ssu1g2974 610 ProSiteProfiles SWIRM domain profile. 1 95 IPR007526 GO:0005515
Ssu1g2974 610 MobiDBLite consensus disorder prediction 573 610 - -
Ssu1g2974 610 Gene3D - 219 269 - -
Ssu1g2974 610 ProSiteProfiles Myb-like domain profile. 215 265 IPR001005 -
Ssu1g2974 610 Coils Coil 472 492 - -
Ssu1g2974 610 MobiDBLite consensus disorder prediction 355 370 - -
Ssu1g2974 610 Pfam SWIRM-associated region 1 426 503 IPR032451 -
Ssu1g2974 610 Pfam SWIRM domain 2 86 IPR007526 GO:0005515
Ssu1g2974 610 Pfam Myb-like DNA-binding domain 222 264 IPR001005 -
Ssu1g2974 610 MobiDBLite consensus disorder prediction 355 413 - -
Ssu1g2974 610 ProSiteProfiles Zinc finger ZZ-type profile. 159 214 IPR000433 GO:0008270
Ssu1g2974 610 PANTHER SWI/SNF COMPLEX-RELATED 1 609 - -
Ssu1g2974 610 CDD SANT 222 264 IPR001005 -
Ssu1g2974 610 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 1 609 - -
Ssu1g2974 610 SUPERFAMILY Homeodomain-like 220 273 IPR009057 -
Ssu1g2974 610 SMART sant 219 267 IPR001005 -
Ssu1g2974 610 SUPERFAMILY Homeodomain-like 3 87 IPR009057 -
Ssu1g2974 610 Gene3D - 3 90 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2974 Ssu-Chr1 78140844 78149057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2974 165 261 EF-hand Containing Proteins AT3G07740 33.019 6.43e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2974 K11649 - gmx:100780440 1123.61