Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2967 ATGATCCAACTCCCCACACACTCCCCTCCTCTCCAACTCGTTTACATAACGGAAAGAAACGGCTCTTCCACCGTATACTACGAAGCCGTTTACACTTCCCCGACCACAAGGAGAAGAAGATCCGCTATCGAATCTGTCATCGCAGACAGAATCCAAATCCCTCTGTTCAGCGACACTTCTCAAGTTTCCCTCAAAGACAAGCCCAATGTGACCCCCGATGGCCAACATTTAGTATACGTATCCACCCACGAGGACCCGGGCGTTCCAAGGGCCAGTTGGGCCGCCGTTTACTCCAGCCACCTCGAATCGGGCCTGACCCAAAGGCTCACCCCCTACGGAGTCGCTGACTTCAGCCCAGCCCTTTCTCCCTCCGGTCTCTGGACCGCGGTCGCTTCCTACGGCCCCGACGGCTGGGCCGGCGAGGTAGAGGATCTCACCACGGACATCTACGTCTTCCTCACACGCGACGGAACTCACCGAGTCAAAATCGTCGAGCACGGTGGCTGGCCCTCCTGGGTCGACGATCGCACTCTTTACTTCCACCGTAGAGGAGACGACCAGTGGTGGAGTATTTACAAAGCGACTCTCCCCTCCAACGGTCCCGTTTCCGTTGACTCGGTCGTCGTCGAACGAGTCACCCCACCGGGTCTCCACGCGTTCACTCCCGCCACCTCACCGGGCAACAACAACTTCATCGCCGTCGCAACCAGAAGGGCAGGTTCCAGTTTTCGTCACATCGAGTTATTCAACCTCGTTAGTAACGAATTCACGGAGCTGACTCGGTTGGTCTCGCCTCGCGCTCACCACCTCAACCCGTTCATCTCGCCCGATTCGTCCCGGGTCGGGTACCACAAGTGCAGAGGAGAACCCAACGCTCGTCGTCATAGCAGCCCACAGCTGTTGCTCGAGAATGTTCAGAGCCCCGTCCCGGGTCTATCTCTGTTCCGGTTTGTCGGTCATTTCCCGGCGTTCTCACCCTCCGGCGACCGGATCGCGTACGTGGAGATGCCGGGAGTTTATGTGGTGAACCGGGACGGTTCGAACCTTCGTAAGGTTTCCAACGCGACGGCGTTCTCGACCGCTTGGGACCCGGTTCGAGCCGGTGTGATATACGCTGCCATCGGGGAAACATTTGCTTCCATGAGTTCACAAGTTGACATCGTATCCATCAACGTTGACGAGAAAAACAGTGTGAGGAGGTTGACCTATGACGGGAAGAACAACGCGTTTCCGTCACCCTCGCCGGACGGGAAATGGATCGTGTTTCGCTCGGGTCGGTCGGGTTATAAGAACTTGTACATAATGGATGCGGTTGGTGGAGAGAGAAAGGAGCTTCGAAGGTTGACGGAAGGTCCGTGGAATGACACGATGTGCAACTGGTCACCGGATGGGGAATGGATCGTTTTTGCGTCGAACCGGCATGACCCGGGCACTGCGAGCTTCGAGCTGTTTTTGATCCACCCGAACGGAACCGGGTTGAGAAAGCTGATTCAAAGCGGGTCGGGTGGGAGGGTGAACCACCCGTGTTTTAGCCCCGATGGGCAGAGTGTAACGTTTGCTTCGGACTATGCGGGTATATCGGCCGAGCCAATCTCCAACCCGGATAGCGCCCTGCCATATGGTGAAATATTCACCGTTAGATTGGACGGTTCGGGCATCAAGAGGCTGACTCATAACTCGTATGAGGATGGAGCGCCTGCTTGGTCTCCCAAGTATATGCACCCGGTGAATGTGGAGAGGCCCAAGGGTGGACCCTATTGCTCTTTTGAAGATTGTTATTATCTCGACAACATGCCCAATAGAACAGGAGTGGGTGTGTCCAAGGCTCAGTGTGCTCTGTAA 1842 0.5608 MIQLPTHSPPLQLVYITERNGSSTVYYEAVYTSPTTRRRRSAIESVIADRIQIPLFSDTSQVSLKDKPNVTPDGQHLVYVSTHEDPGVPRASWAAVYSSHLESGLTQRLTPYGVADFSPALSPSGLWTAVASYGPDGWAGEVEDLTTDIYVFLTRDGTHRVKIVEHGGWPSWVDDRTLYFHRRGDDQWWSIYKATLPSNGPVSVDSVVVERVTPPGLHAFTPATSPGNNNFIAVATRRAGSSFRHIELFNLVSNEFTELTRLVSPRAHHLNPFISPDSSRVGYHKCRGEPNARRHSSPQLLLENVQSPVPGLSLFRFVGHFPAFSPSGDRIAYVEMPGVYVVNRDGSNLRKVSNATAFSTAWDPVRAGVIYAAIGETFASMSSQVDIVSINVDEKNSVRRLTYDGKNNAFPSPSPDGKWIVFRSGRSGYKNLYIMDAVGGERKELRRLTEGPWNDTMCNWSPDGEWIVFASNRHDPGTASFELFLIHPNGTGLRKLIQSGSGGRVNHPCFSPDGQSVTFASDYAGISAEPISNPDSALPYGEIFTVRLDGSGIKRLTHNSYEDGAPAWSPKYMHPVNVERPKGGPYCSFEDCYYLDNMPNRTGVGVSKAQCAL 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2967 613 Gene3D - 31 309 IPR011042 -
Ssu1g2967 613 SUPERFAMILY DPP6 N-terminal domain-like 69 283 - -
Ssu1g2967 613 SUPERFAMILY DPP6 N-terminal domain-like 216 524 - -
Ssu1g2967 613 PANTHER DPP6 N-TERMINAL DOMAIN-LIKE PROTEIN 4 591 - -
Ssu1g2967 613 Gene3D - 500 572 IPR011042 -
Ssu1g2967 613 Pfam WD40-like Beta Propeller Repeat 554 570 IPR011659 -
Ssu1g2967 613 Pfam WD40-like Beta Propeller Repeat 445 477 IPR011659 -
Ssu1g2967 613 Pfam WD40-like Beta Propeller Repeat 399 434 IPR011659 -
Ssu1g2967 613 Pfam WD40-like Beta Propeller Repeat 508 522 IPR011659 -
Ssu1g2967 613 PANTHER DPP6 N-TERMINAL DOMAIN-LIKE PROTEIN 4 591 - -
Ssu1g2967 613 Gene3D - 316 499 IPR011042 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2967 Ssu-Chr1 77959862 77961703 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2967 - - aprc:113853220 1029.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2967 1 77959862 77961703 Ssu1g2967 1 77959862 77961703 ECH