Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2964 ATGGCTTTGGCAGCAAGCGTCATCACCAAACATTTAACGTCTCCATTGACATGCATCAACAAGGAGCCTCCAAGTGTTTCGACGATGATGGTCGCCCCAAACGAACCGGTATTAAAAGcttcatattatattttgcCCTATGTTGTGTACTTGTGTTACTTCCTCCCACACAATTATATTGTGGTGTGTGTAACAAGCACAGGGACGGTGTGGACTGCAAGTGCACACATAATAACCGCAGTGATTGGGTCTGGGGTGCTGTCTCTGGCTTGGGCTATAGCTCAGCTTGGATGGATTGCTGGTCCTGCTGTCATGGTTCTCTTCTCTGTCATCACTTACTACACCTCCATTCTTCTCTCTGATTGTTATCGTACTGGTGATCCTCTCTCTGGCAAGAGAAACTACACTTACATGGATGCTATTCATTCTAACTTTGGTGGCAGTGGCTTTAAGGTCAAGATGTGTGGGCTAGTTCAGTATGTTAACCTTTTCGGAAACGCCATTGGTTACACTATAGCGGCTTCCATTAGCATGATGGCAATCGAAAGATCTAATTGTTTCCACAAGAGTGGAGGGAAAAATCCATGTCATATGAACAGCAATATGTACATGATTTCATTTGGTATAGTGGAGattattttctctcaaattcCAGGCTTCGATCAATTATGGTGGCTCTCCATTGTAGCTGCTGTCATGTCCTTCACATACTCCACCATTGGGCTAGGCCTGGGTATTGGAAAAGTTATAGGAAACGGAAGAGTTGGGGGAAGCCTAACCGGGATAACCGTTGGTACTGTGACACAAACTGATAAAGTTTGGAGAACCATGCAAGCTCTTGGTAACATAGCCTTTGCCTATTCATACTCTTTCATCCTTATAGAAATCCAGGACACAGTGAAATCCCCTCCATCAGAGTCAAAAACAACGAGGAAGGCTACATTTATTAGTGTAGCAGTGACCACCATTTTCTACATGCTTTGTGGCTGCTTTGGGTATGCTGCTTTCGGAGATTCAAGCCCTGGAAACCTTCTCACTGGTTTTGGCTTCTATAACCCATACTGGCTCCTTGACATAGCTAATACTGCCATAGTGATCCACCTTATTGGTTCATACCAAGTTTACAGCCAGCCCCTCTTTGCTTTCATTGAGAAACACGTAGCACGTAGATTCCCAGATAGTGATTTTGTGaacaaagaaattgaaattccaCTTCCTGGTTTCCATCCCTACAAGCTCAACCTCTTCCGACTGGTTTGGAGGACAATTTTTGTAATCGTAGGCACTGTAATATCAATGCTCCTCCCATTCTTCAATGACATAGGGGGACTTCTTGGAGCTCTTGGATTTTGGCCCCTTACTGTGTATTTCCCAGTGGAGATTTACATTATTCAAAGGAGAATACCAAAGTCGAGCCCAAAATGGATCTGCCTCCAAATACTTAGCATTGCTTGCCTTATAATGACTATAGGGGCTGCAGCTGGCTCTATTGCTGGAATTGTCATTGATCTTCAAGCTTACAAGCCTTTCAAGACCAACTATTGA 1545 0.4272 MALAASVITKHLTSPLTCINKEPPSVSTMMVAPNEPVLKASYYILPYVVYLCYFLPHNYIVVCVTSTGTVWTASAHIITAVIGSGVLSLAWAIAQLGWIAGPAVMVLFSVITYYTSILLSDCYRTGDPLSGKRNYTYMDAIHSNFGGSGFKVKMCGLVQYVNLFGNAIGYTIAASISMMAIERSNCFHKSGGKNPCHMNSNMYMISFGIVEIIFSQIPGFDQLWWLSIVAAVMSFTYSTIGLGLGIGKVIGNGRVGGSLTGITVGTVTQTDKVWRTMQALGNIAFAYSYSFILIEIQDTVKSPPSESKTTRKATFISVAVTTIFYMLCGCFGYAAFGDSSPGNLLTGFGFYNPYWLLDIANTAIVIHLIGSYQVYSQPLFAFIEKHVARRFPDSDFVNKEIEIPLPGFHPYKLNLFRLVWRTIFVIVGTVISMLLPFFNDIGGLLGALGFWPLTVYFPVEIYIIQRRIPKSSPKWICLQILSIACLIMTIGAAAGSIAGIVIDLQAYKPFKTNY 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2964 514 PANTHER OS05G0424000 PROTEIN-RELATED 66 508 - -
Ssu1g2964 514 PANTHER AMINO ACID CARRIER 66 508 - -
Ssu1g2964 514 Pfam Transmembrane amino acid transporter protein 67 501 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2964 Ssu-Chr1 77911792 77913735 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2964 64 514 Organic Solute Cotransporters AT5G09220 73.673 0.0 713
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2964 K24917 - gmx:100792389 810.061
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2964 1 77911792 77913735 Ssu1g2964 1 77911792 77913735 ECH