Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2962 ATGGATAAGTATGATGTGGTTCCAAATCTTGCTGCATTTAATGGTTTGTTAAGTGCTTTGTGCAAGTCCAACAATGTGAGGAAGGCACAGGAGATTTTTGATGCTATGAAGGGTCGGTTTGTGCCGGACTCGAAAACTTACAGCATTTTGCTTGAGGGGTGGGGGAAGGCTCCCAATCTTCCCCGGGCGAGAGAGGTTTTTGGAGAGATGGTTTGCGCGGGGTGCGACCCTGATGTTGTTACTTATGGTATCATGGTTGACATTCTTTGCAAAGTGGGGAGGGTTGATGAAGCTGTTGAGGTTGTGAAGGAAATGGATGAGAACAATTGCAGGCCGACGTCTTTCATTTATAGTGTCTTGGTTCATACTTATGGAGTGGAGCACCGGATTGAAGATGCTATTGATACGTTCCTGGAGATGGAGAGGAAGGGAATCAAGGCTGATGTTGTGGTGTATAATGCCTTGATTGGTGCCTTTTGTAAAGTAAAGAAGTTTAAAAATGTGCACAGGGTCTTGCAGGAGATGGAATGCAATGGGGTTGCTCCTAATTCAAGGACCTGCAATGTTATCATAAGCAGTATGATTGGCCAGGGACAGACCGATAAAGCTTTCCGAGTCTTCCGCCGGATGATCAAGTTGTGTGAACCGGATGCAGACACTTATACAATGATGATAAAGATGTTCTGTGAGAAAAATGAACTGGAGATGGCTCTGAAAATATGGAAGTATATGAAGTCAAAACAGTTTGTCCCAAGCATGCACACCTTTTCTGCCCTTATCAAGGGGTTGTGTGAAAAGGGCAATGCTGCAAAAGCTTGTGTTGTGATGGAAGAGATGTTAGAGAAGGGAATTCGACCATCACGTGTTACATTTGGGAGGTTAAGACAGTTGCTTATAAAGGAAGGGAGAGAGGATGTGCTCAAATTTCTTCATGAGAAAATGAATCTTCTTGTCAAGGAGcctttatatgattaa 975 0.4328 MDKYDVVPNLAAFNGLLSALCKSNNVRKAQEIFDAMKGRFVPDSKTYSILLEGWGKAPNLPRAREVFGEMVCAGCDPDVVTYGIMVDILCKVGRVDEAVEVVKEMDENNCRPTSFIYSVLVHTYGVEHRIEDAIDTFLEMERKGIKADVVVYNALIGAFCKVKKFKNVHRVLQEMECNGVAPNSRTCNVIISSMIGQGQTDKAFRVFRRMIKLCEPDADTYTMMIKMFCEKNELEMALKIWKYMKSKQFVPSMHTFSALIKGLCEKGNAAKACVVMEEMLEKGIRPSRVTFGRLRQLLIKEGREDVLKFLHEKMNLLVKEPLYD 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2962 324 Gene3D Tetratricopeptide repeat domain 1 92 IPR011990 GO:0005515
Ssu1g2962 324 Gene3D Tetratricopeptide repeat domain 93 197 IPR011990 GO:0005515
Ssu1g2962 324 Pfam PPR repeat family 216 264 IPR002885 -
Ssu1g2962 324 Pfam PPR repeat family 8 53 IPR002885 -
Ssu1g2962 324 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 148 182 IPR002885 -
Ssu1g2962 324 TIGRFAM PPR: pentatricopeptide repeat domain 220 252 IPR002885 -
Ssu1g2962 324 TIGRFAM PPR: pentatricopeptide repeat domain 80 113 IPR002885 -
Ssu1g2962 324 TIGRFAM PPR: pentatricopeptide repeat domain 12 39 IPR002885 -
Ssu1g2962 324 TIGRFAM PPR: pentatricopeptide repeat domain 186 212 IPR002885 -
Ssu1g2962 324 TIGRFAM PPR: pentatricopeptide repeat domain 254 287 IPR002885 -
Ssu1g2962 324 TIGRFAM PPR: pentatricopeptide repeat domain 116 149 IPR002885 -
Ssu1g2962 324 TIGRFAM PPR: pentatricopeptide repeat domain 150 183 IPR002885 -
Ssu1g2962 324 TIGRFAM PPR: pentatricopeptide repeat domain 46 79 IPR002885 -
Ssu1g2962 324 Pfam Pentatricopeptide repeat domain 139 194 IPR002885 -
Ssu1g2962 324 PANTHER OS03G0761300 PROTEIN 1 321 - -
Ssu1g2962 324 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 183 213 IPR002885 -
Ssu1g2962 324 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 113 147 IPR002885 -
Ssu1g2962 324 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 78 112 IPR002885 -
Ssu1g2962 324 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 39 IPR002885 -
Ssu1g2962 324 Pfam PPR repeat 74 105 IPR002885 -
Ssu1g2962 324 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 217 251 IPR002885 -
Ssu1g2962 324 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 252 286 IPR002885 -
Ssu1g2962 324 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 321 - -
Ssu1g2962 324 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 43 77 IPR002885 -
Ssu1g2962 324 Gene3D Tetratricopeptide repeat domain 198 322 IPR011990 GO:0005515
Ssu1g2962 324 SUPERFAMILY HCP-like 99 294 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2962 66 312 Glycosyltransferase AT1G05670 29.317 7.43e-28 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2962 - - gmx:100790096 615.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2962 1 77872318 77873292 Ssu1g2962 1 77872318 77873292 ECH