Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2960 ATGAAGGAAGAGCATGGCGGTGATATCTTGGCTAGTTATGCTTGTTGGGTGGAGAAAGTTAGTTCTGTTCTGGAAGACAAACTAGGCTCTGAATATCTGTCGCTGAGGCAGACTCTTTGCAAATGTTTGGATGTTGATCCAGGAAACCGTCCAGATGTGGTGGATGTAAGAAAATGCATTCAGGATATGTTGGTCAAACCTCAATTTGATTTTCTGGGCAACTTGGAGGTCACAAGAAATAGGAACAACACAGGTTGCTGCTTGGTTCTAGGGGAGTTGTGCCTGTTGCCTAAGCAAAGTTGTAATGAACCGAGTGAACATGAGTTGCAGGAGAAAGAAATTGGCGGTGAACCAAATTGTGTTCAAGATGGCAGAGACAAATCTGATAAAGGCTTTGCTGCTGGCTTATCTAAGGGAGTGACTGAACTCAAAGATTTGCGAGGCCATCTTGATTGTATCAGTAGATTGGCTATTGGGGGGGGGTACCTATTTAGCTCCTCATATGATAAAACTGTTCGTGTATGGTCCTCACAGGACTTTTCTCATTTACACACATTTAGAGGTCATGAGAATAAAGTCATGGCTCTAGTTTATGTAGATGAAGAAGAACCATTGTGCATAAGTGGTGACAGTGGAGGGGGCATATTTGTCTGGGGAATTTCTGCCACTCTCAGGCAAGATCCCTTGAGGAAATGGTATGAGAATAAGGATTGGCGTTTTAGTGGTATCCACTCCTTGGctgtttccaaaaatcattctCTCTACACTGGAAGTGGAGATAAAACAATAAAAGCTTGGTCATTAAAGGATGAAACTTTGATATGCACAATGACTGGCCATAGATCTGTAGTTTCCACACTTGCTGTATGTGATGAGGTTCTTTACAGTGGTAGTTGGGATGGTACAGTTCGGTTGTGGAGTCTTAATGACCACAGTCCATTGACAGTACTGGGGGAAGATACGCCTGCAGAGATGAAGCCTATCCTGGCTATTACTGTAGATAGGCATTTGCTTGTTGCGGCATATGAGAATGGATGCATAAAGGTCTGGAGAAACGACATATTCATGAATTCCAAAACATTGCATAATGGGGCTATTTTTGCTATGAGTATGCAGGAAAATGCCTTTATACAGGAGGTCgggacaaaaatattaatatacagGAATTATCTGGAGATGAGTTTGAACTGGACGTCAAAGCATATGGATCCATTCCTTGCAGTTCTGTTGTAA 1233 0.4128 MKEEHGGDILASYACWVEKVSSVLEDKLGSEYLSLRQTLCKCLDVDPGNRPDVVDVRKCIQDMLVKPQFDFLGNLEVTRNRNNTGCCLVLGELCLLPKQSCNEPSEHELQEKEIGGEPNCVQDGRDKSDKGFAAGLSKGVTELKDLRGHLDCISRLAIGGGYLFSSSYDKTVRVWSSQDFSHLHTFRGHENKVMALVYVDEEEPLCISGDSGGGIFVWGISATLRQDPLRKWYENKDWRFSGIHSLAVSKNHSLYTGSGDKTIKAWSLKDETLICTMTGHRSVVSTLAVCDEVLYSGSWDGTVRLWSLNDHSPLTVLGEDTPAEMKPILAITVDRHLLVAAYENGCIKVWRNDIFMNSKTLHNGAIFAMSMQENAFIQEVGTKILIYRNYLEMSLNWTSKHMDPFLAVLL 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2960 410 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 277 309 - -
Ssu1g2960 410 PANTHER - 5 377 IPR044715 -
Ssu1g2960 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 277 316 IPR001680 GO:0005515
Ssu1g2960 410 PRINTS G protein beta WD-40 repeat signature 163 177 IPR020472 -
Ssu1g2960 410 PRINTS G protein beta WD-40 repeat signature 294 308 IPR020472 -
Ssu1g2960 410 PRINTS G protein beta WD-40 repeat signature 254 268 IPR020472 -
Ssu1g2960 410 SUPERFAMILY WD40 repeat-like 142 371 IPR036322 GO:0005515
Ssu1g2960 410 SMART WD40_4 310 351 IPR001680 GO:0005515
Ssu1g2960 410 SMART WD40_4 139 176 IPR001680 GO:0005515
Ssu1g2960 410 SMART WD40_4 225 267 IPR001680 GO:0005515
Ssu1g2960 410 SMART WD40_4 179 219 IPR001680 GO:0005515
Ssu1g2960 410 SMART WD40_4 270 307 IPR001680 GO:0005515
Ssu1g2960 410 PANTHER FINGER (CCCH TYPE) PROTEIN, PUTATIVE-RELATED 5 377 - -
Ssu1g2960 410 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 185 IPR001680 GO:0005515
Ssu1g2960 410 Gene3D - 126 389 IPR015943 GO:0005515
Ssu1g2960 410 Pfam WD domain, G-beta repeat 143 176 IPR001680 GO:0005515
Ssu1g2960 410 Pfam WD domain, G-beta repeat 274 307 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2960 117 377 Acyl Lipid Metabolism Gene Families AT3G18860 27.372 1.22e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2960 - K03070 gmx:100793437 675.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2960 1 77849608 77852295 Ssu1g2960 1 77849608 77852295 ECH