Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2959 ATGGCCGCGCTCTCATGTCCACCATTCTTCGGCCTTCACAGAATCACTTCCACCGACGCCAAAGCCAACGCCAACTCCTTCTTCATTCGGTCGCGTCCTTCCGTTCCTCCCTGGCCTCGCCTGCGACGACCTCGTTGCGCACCCGTTCTCGTCACCGTCGCGTCCGTGAAGGGAAATCTCGGTCGTGTTCAAAAGCGTTTCACCGACTTCACGAGCCTGAACTACTGGGTTGTTCGCGACTATTACCGTCTCGTGAACTCCGTCAACGCCTTCGAGCCGCAGATTCGGGCGCTCTCCGATGAACAGCTGGCCGCGAAGACCGCCGAGTTTCGCCGCCGGCTCACGCGAGGGGCTACGCTTGCCGACATTCAAGCTGAGGCGTTTGCTGTTGTTCGTGAAGCTGCATGGAGAAAACTTGGAATGCGCCATTTTGATGTTCAGATTATTGGTGGAGCAGTGCTGCATGATGGTTCTATTGCTGAGATGAAAACGGGAGAGGGTAAAACCTTGGTTTCCACACTAGCGGCATATCTTAATGCCCTGACCTCTGAGGGTGTTCATGTGGTAACTGTCAATGATTATCTGGCTCAACGTGATGCTGAATGGATGGGGCGTGTTCATCGTTTCTTAGGTCTCTCTGTTGGTCTTATTCAGAGAGGAATGAATGCCGAAGAACGGAGATTCAACTACAGATGTGATATAACATATACCAATAATTCGGAGCTTGGCTTTGATTACTTGCGGGATAATCTTGCTGGAAATAGCGAACAGCTTGTAATGAGATGGCCAAAGCCCTTTCATTTTGCAATTGTTGATGAAGTGGATTCTGTCCTGATAGATGAAGGAAGAAATCCTTTGTTAATCAGTGGTGAGGCTAGTAAAGATGCTGCAAGATTCCCTGTTGCTGCAAAAGTAGCTGAACTGCTTATACAAGGCATTcATTACAAAGTGGAGCTTAAAGATAATTCTGTGGAGTTGACTGAGGAAGGAATTGCTCTTGCTGAAATGGCTCTTGAAACTAATGACCTTTGGGATGAAAATGATCCCTGGGCCAGATTTGTGATGAATGCTTTGAAAGCTAAAGAATTCTATCGCCGAGATGTGCAATACATTGTCAGAGATGGGAAGGCTTTGATTATCAACGAGCTGACAGGAAGAGTTGAAGAGAAAAGGAGATGGTCTGAGGGGATTCACCAGGCTGTGGAGGCAAAGGAAGGTTTGAAGATTCAGGCAGATTCTGTTGTTGTGGCACAGATCACATACCAGTCATTATTCAAGCTCTATCCAAAGTTGTCAGGAATGACTGGGACTGCCAAAACAGAAGAGAAAGAGTTCTTAAAAATGTTCCGGATGCCAGTCATTGAAGTGCCGACAAATCTACCGAATATTCGTAAAGATTTGCCTATTCAAGCTTTTGCTACTGCTCGTGGAAAATGGGAGCAAGTTCGACGAGAAGTTGAATATATGTTTAAACAAGGTCGTCCTGTCTTAGTTGGGACAACAAGTGTAGAAAATTCAGAACTTCTGTCTGGTCTGCTTAGGGAATGGAATATTCCTCATAATGTTCTGAATGCTCGACCCAAGTATGCTGCAAAAGAAGCTGAAATTGTTGCACAGGCAGGACGGAAACATGCCATTACCCTCTCTACAAATATGGCAGGCAGGGGCACAGATATAATCCTTGGAGGAAATCCAAAAATGCTTGCCAGGGAAATTATAGAGGATAGCTTACTTTCATTTCTGACGCGAGAGAATCCAAATGTTGAACTTGCTGATGAGGCTATTTCACAAAAGGTGCTTCCAAAGATAAAGGTTGGATCATCATCAATGGCCTTACTGGCTAAGTCAGCCTTAATGGCCAAATATGTATCCAAAAGTGAGGGTAAAAGTTGGACATATCAGAAGGCTAAATCTTTTATCTTGGAGGCAGTTGAAATGAGTCTTTCATATAGTTTGGAGGAGCTGGAGAAGCTTGCTAATGAAGAATCTGAGATCTACCCTCTTGGTCCAACTGTAGCACTTGCCTATCTGTCAGTTTTGAAGGACTGTGAAGAACACTGTTTGCATGAAGGTTCTGAGGTAAAAAGGCTTGGGGGTCTTCATGTGATTGGTACATCTTTACATGAGTCCCGGAGAATAGATAACCAGCTACGTGGCAGAGCAGGAAGACAAGGGGATCCAGGATCAACACGATTTATGGTCAGCTTGCAGGATGAGATGTTTCAAAAGTTCAATTTTGACACTGAATGGGCGGTGAGACTTATCTCAAAGATTACAAATGACGAGGATCTGCCAATTGAGGGTGATGCCATTGTAAAGCAgCTTTTGGCGCTGCAAATCAATGCAGAAAAGTTCTTCTTCAGCATAAGAAAGAAccttgttgaatttgatgaagtGTTGGAGgtGCAACGAAAGCATGTTTATGATCTAAGGCAATTAATCTTAACAGGAGATGATGACAGCTGTTCCCAACACATATTCCAGTACATGCAAGCAGTGGTGGACGAGATCGTCTTCAGTAATATTGATCCACTGAAGCATCCACGTAGCTGGGGTTTGAGTAAGCTCTTGAAAGAGTTTATGACTGTTGGTGGAAAGCTGTTGCATGAATCTTTTGGAGGAATTAGTGATGACACTTTGCTAAATTCACTTGGGCTACTGAATGATGTGAGTTCAGTTGATGTTGTCAACTTTTCCCTTCCAAATTTGCCAGCTCCTCCAAATGCCTTCACGGGAATTCGCAGGAAGATCTCTTCATTAAGACGATGGCTTGCTATTTGCACTGATGATTTAATTGGGAATGGGAAGTATCAAACAACTTCTAATCTTCTGCGCAAGTATCTTGGAGATTTTCTAATTGCTTCATATTTAAATGTTGTTGAAGAGTCTGGTTATGATGAGAGACATGTAAAGGAAATTGAGAGGGCTGTTCTTTTGGAAACTCTTGATTGTTTCTGGAGAGATCATCTTGTAAACATGAATAGACTCAGCTCTGCGGTGAATGTTAGGAGCTTTGGCCATAGAAATCCTCTTGAAGAGTATAAAATTGATGGTTGTCGGTTTTTTATCTCAATGCTCAGTGCAACTCGAAGGTTAACTGTAGAAGCACTGATGCGGTATTGGACTTCTCCAATGGAATCCCAAGAACTGTTTTTATCATAA 3162 0.4361 MAALSCPPFFGLHRITSTDAKANANSFFIRSRPSVPPWPRLRRPRCAPVLVTVASVKGNLGRVQKRFTDFTSLNYWVVRDYYRLVNSVNAFEPQIRALSDEQLAAKTAEFRRRLTRGATLADIQAEAFAVVREAAWRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTSEGVHVVTVNDYLAQRDAEWMGRVHRFLGLSVGLIQRGMNAEERRFNYRCDITYTNNSELGFDYLRDNLAGNSEQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARFPVAAKVAELLIQGIHYKVELKDNSVELTEEGIALAEMALETNDLWDENDPWARFVMNALKAKEFYRRDVQYIVRDGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQITYQSLFKLYPKLSGMTGTAKTEEKEFLKMFRMPVIEVPTNLPNIRKDLPIQAFATARGKWEQVRREVEYMFKQGRPVLVGTTSVENSELLSGLLREWNIPHNVLNARPKYAAKEAEIVAQAGRKHAITLSTNMAGRGTDIILGGNPKMLAREIIEDSLLSFLTRENPNVELADEAISQKVLPKIKVGSSSMALLAKSALMAKYVSKSEGKSWTYQKAKSFILEAVEMSLSYSLEELEKLANEESEIYPLGPTVALAYLSVLKDCEEHCLHEGSEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVRLISKITNDEDLPIEGDAIVKQLLALQINAEKFFFSIRKNLVEFDEVLEVQRKHVYDLRQLILTGDDDSCSQHIFQYMQAVVDEIVFSNIDPLKHPRSWGLSKLLKEFMTVGGKLLHESFGGISDDTLLNSLGLLNDVSSVDVVNFSLPNLPAPPNAFTGIRRKISSLRRWLAICTDDLIGNGKYQTTSNLLRKYLGDFLIASYLNVVEESGYDERHVKEIERAVLLETLDCFWRDHLVNMNRLSSAVNVRSFGHRNPLEEYKIDGCRFFISMLSATRRLTVEALMRYWTSPMESQELFLS 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2959 1053 CDD DEXDc_SecA 102 458 - -
Ssu1g2959 1053 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 59 1051 IPR000185 GO:0005524|GO:0006605|GO:0006886
Ssu1g2959 1053 SUPERFAMILY Helical scaffold and wing domains of SecA 771 867 IPR036266 -
Ssu1g2959 1053 SUPERFAMILY Pre-protein crosslinking domain of SecA 290 411 IPR036670 GO:0016020|GO:0017038
Ssu1g2959 1053 Pfam SecA Wing and Scaffold domain 765 1040 IPR011116 GO:0016020|GO:0017038
Ssu1g2959 1053 SMART SecA_PP_bind_2 291 402 IPR011130 GO:0016020|GO:0017038
Ssu1g2959 1053 Gene3D - 461 767 IPR027417 -
Ssu1g2959 1053 Gene3D Helical scaffold and wing domains of SecA 911 1043 - -
Ssu1g2959 1053 TIGRFAM secA: preprotein translocase, SecA subunit 88 859 IPR000185 GO:0005524|GO:0006605|GO:0006886
Ssu1g2959 1053 Hamap Protein translocase subunit SecA [secA]. 62 1043 IPR000185 GO:0005524|GO:0006605|GO:0006886
Ssu1g2959 1053 Gene3D Helical scaffold and wing domains of SecA 770 873 - -
Ssu1g2959 1053 Pfam SecA DEAD-like domain 77 445 IPR011115 GO:0005524|GO:0016020|GO:0017038
Ssu1g2959 1053 PRINTS SecA protein signature 123 147 IPR000185 GO:0005524|GO:0006605|GO:0006886
Ssu1g2959 1053 PRINTS SecA protein signature 230 250 IPR000185 GO:0005524|GO:0006605|GO:0006886
Ssu1g2959 1053 PRINTS SecA protein signature 383 405 IPR000185 GO:0005524|GO:0006605|GO:0006886
Ssu1g2959 1053 PRINTS SecA protein signature 161 175 IPR000185 GO:0005524|GO:0006605|GO:0006886
Ssu1g2959 1053 PRINTS SecA protein signature 177 187 IPR000185 GO:0005524|GO:0006605|GO:0006886
Ssu1g2959 1053 PRINTS SecA protein signature 457 470 IPR000185 GO:0005524|GO:0006605|GO:0006886
Ssu1g2959 1053 PRINTS SecA protein signature 420 437 IPR000185 GO:0005524|GO:0006605|GO:0006886
Ssu1g2959 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 69 459 IPR027417 -
Ssu1g2959 1053 Gene3D - 292 412 - -
Ssu1g2959 1053 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 149 312 IPR014001 -
Ssu1g2959 1053 SUPERFAMILY Helical scaffold and wing domains of SecA 887 1050 IPR036266 -
Ssu1g2959 1053 ProSiteProfiles SecA family profile. 63 767 IPR014018 -
Ssu1g2959 1053 CDD SF2_C_secA 464 735 IPR044722 -
Ssu1g2959 1053 PANTHER PROTEIN TRANSLOCASE SUBUNIT SECA2, CHLOROPLASTIC 59 1051 - -
Ssu1g2959 1053 Gene3D - 82 459 IPR027417 -
Ssu1g2959 1053 SMART SecA_DEAD_2 67 446 IPR011115 GO:0005524|GO:0016020|GO:0017038
Ssu1g2959 1053 Pfam SecA preprotein cross-linking domain 302 402 IPR011130 GO:0016020|GO:0017038
Ssu1g2959 1053 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 461 748 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2959 Ssu-Chr1 77813816 77839547 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2959 K03070 - gmx:100793437 1855.88