Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2958 ATGGCAGTTCCGGTGATTGATTTTTCAAAGCTGAATGGAGAAGAAAGAGCCAAAACCATGGCACAGATCGCTAATGGGTGTGAAGAGTGGGGATTTTTCCAGTTGATCAACCATGGCATTCCAGAGGAACTCCTTGAGAGGGTTAAGAAGGTTTCCTCCGAGTTCTATAAGCTGGAAAGAGAGGAGACTTTCAAGAACTCGACATCAGTGAAGATACTAAGCGATTTAGTTGAAAAGAAGAGCAGTGAAAAGCTGGAGCATGTGGATTGGGAGGATGTTATCACTCTCCTTGATGATAACGAATGGCCAGAAAGAACACCAGGCTTCAGGGAAACCATGGCGGAATACCGATCTGAGTTAAAGAAATTGGCAGAGAGGGTGATGGAGGCGATGGATGAGAATCTGGGCTTGCCCAAAGGGTACATCAAGAAGGCACTCAATGGTGGAGATGGAGACAATGCCTTCTTTGGCACCAAGGTCAGCCACTACCCTCCCTGTCCCCATCCAGAGCTTGTGAACGGTCTGCGAGCTCACACTGATGCAGGAGGTGTCATCCTACTCTTCCAAGATGACAAGGTTGGTGGCCTTCAGATGCTCAAAGATGGGCAATGGATTGATGTGCAACCTTTGCCAAATGCCATTGTCATCAACACTGGTGATCAGATTGAGGTCCTGAGCAATGGTAGATACAAGAGTTGTTGGCACAGGGTTCTGGCCACCCCAGATGGGAACAGAAGATCAGTTGCCTCCTTCTATAACCCATCACTCAAGGCCACAATCTGTCCTGCACCACAACTCGCGGAGAAAGAAAACCAGCAAGTGGATGACACTTATCCTAAGTTCGTTTTTGGTGACTACATGTCTGTCTATGCTGAGCAAAAGTTCCTTCCCAAGGAACCGAGGTTCCGAGCTGTTAGGGCCATGTGA 927 0.48 MAVPVIDFSKLNGEERAKTMAQIANGCEEWGFFQLINHGIPEELLERVKKVSSEFYKLEREETFKNSTSVKILSDLVEKKSSEKLEHVDWEDVITLLDDNEWPERTPGFRETMAEYRSELKKLAERVMEAMDENLGLPKGYIKKALNGGDGDNAFFGTKVSHYPPCPHPELVNGLRAHTDAGGVILLFQDDKVGGLQMLKDGQWIDVQPLPNAIVINTGDQIEVLSNGRYKSCWHRVLATPDGNRRSVASFYNPSLKATICPAPQLAEKENQQVDDTYPKFVFGDYMSVYAEQKFLPKEPRFRAVRAM 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2958 308 PANTHER 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE 5-LIKE 2 306 - -
Ssu1g2958 308 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 154 254 IPR005123 -
Ssu1g2958 308 Gene3D - 2 308 IPR027443 -
Ssu1g2958 308 Pfam non-haem dioxygenase in morphine synthesis N-terminal 3 100 IPR026992 -
Ssu1g2958 308 Pfam 2OG-Fe(II) oxygenase superfamily 161 254 IPR044861 -
Ssu1g2958 308 PANTHER OXOGLUTARATE/IRON-DEPENDENT DIOXYGENASE 2 306 - -
Ssu1g2958 308 Coils Coil 113 133 - -
Ssu1g2958 308 SUPERFAMILY Clavaminate synthase-like 2 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2958 Ssu-Chr1 77772301 77773758 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2958 1 271 Glycosyltransferase AT5G59530 33.569 5.38e-46 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2958 K05933 - gmx:100796909 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2958 1 77772301 77773758 Ssu1g2958 1 77772301 77773758 ECH