Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2948 atgttgtttgtcaTTATGTGTCTCCTGACCCCAACTGACTTGAGGCGAATTTTTGAGAAAGTGGACGTGAATGGCGACGGATTGGTGAGCCTTGAGGAGCTGAACCGGCTGCTTCAGATGACGGGTAATTCCCAGTATAGCATGGAAGAGTTGGAATCTCTGGTGGAAAAGAAGAGCCTGGGTTTGAGCGAGTTCTTGTTCTTTTACAAGTCCATATCGGAGCAGAACAACGGGGAGAGCAGGGGAGGTGGAGACGCACAGGAGTTGGAGAGCGACCTCGCGAAGACCTTCAACGTGTTCGACTTGGATGGGGATGGGTTCATCACCAGCCAAGAGCTGGAGTCTGTGTTGAAGAGGCTCGGCTTGTGGGATGAAACCAACGGCAAGGATTGCAGAAGCATGATCCGATTCTACGACACCAATTTGGATGGTCGCCTTGATTTCCAGGAATTCAAGACCATGATGTTGCTTACCAAAGCCTGA 483 0.4948 MLFVIMCLLTPTDLRRIFEKVDVNGDGLVSLEELNRLLQMTGNSQYSMEELESLVEKKSLGLSEFLFFYKSISEQNNGESRGGGDAQELESDLAKTFNVFDLDGDGFITSQELESVLKRLGLWDETNGKDCRSMIRFYDTNLDGRLDFQEFKTMMLLTKA 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2948 160 ProSitePatterns EF-hand calcium-binding domain. 101 113 IPR018247 -
Ssu1g2948 160 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 7 159 - -
Ssu1g2948 160 PANTHER CALCIUM-BINDING PROTEIN CML44-RELATED 7 159 - -
Ssu1g2948 160 CDD EFh 92 155 IPR002048 GO:0005509
Ssu1g2948 160 Gene3D - 10 158 - -
Ssu1g2948 160 ProSiteProfiles EF-hand calcium-binding domain profile. 88 123 IPR002048 GO:0005509
Ssu1g2948 160 ProSiteProfiles EF-hand calcium-binding domain profile. 9 44 IPR002048 GO:0005509
Ssu1g2948 160 SMART efh_1 130 158 IPR002048 GO:0005509
Ssu1g2948 160 SMART efh_1 13 41 IPR002048 GO:0005509
Ssu1g2948 160 SMART efh_1 92 120 IPR002048 GO:0005509
Ssu1g2948 160 Pfam EF hand 13 40 IPR002048 GO:0005509
Ssu1g2948 160 Pfam EF-hand domain pair 91 155 IPR002048 GO:0005509
Ssu1g2948 160 SUPERFAMILY EF-hand 13 157 IPR011992 -
Ssu1g2948 160 ProSitePatterns EF-hand calcium-binding domain. 22 34 IPR018247 -
Ssu1g2948 160 Coils Coil 157 160 - -
Ssu1g2948 160 ProSiteProfiles EF-hand calcium-binding domain profile. 126 160 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2948 Ssu-Chr1 77553285 77553767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2948 8 156 EF-hand Containing Proteins AT1G21550 44.295 1.29e-38 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2948 K13448 - gmx:100527117 261.922
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2948 1 77553285 77553767 Ssu1g2948 1 77553285 77553767 ECH