Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2944 atggaTACTATTGCATTACATCATATCACATCTCTTTCTCTAGGTGTGAAACAAGACGAGCCTCTCCACGCATcattgttgaaaaagaaaatcaaccaCCTTCTGGCGCACGTCATCAACCTCTCCTCCAACGAAATGGCATATTTGGAGGAAATACGAGAGAAACAAAGAGCTCGTGGCCCAGCCACCATACTAGCCATTGGCACCGCAACTCCACCCAACTGCGTTTACCAAGCTGACTTTACGGATTATTATTTCCAAGTGACCAAGAGCGAGCACATGACTGAACTCAAGGCCAAGTTGAAGCGCATATGTAAGATCAGGATTATTATCTACAAATTCATGCGGCATCTCAATATTGTGTCAGTTTGTGTGCACGTACACCTTCATAGTAGCTTaggttttacttttatttga 417 0.3981 MDTIALHHITSLSLGVKQDEPLHASLLKKKINHLLAHVINLSSNEMAYLEEIREKQRARGPATILAIGTATPPNCVYQADFTDYYFQVTKSEHMTELKAKLKRICKIRIIIYKFMRHLNIVSVCVHVHLHSSLGFTFI 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2944 138 Gene3D - 36 131 IPR016039 GO:0016746
Ssu1g2944 138 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 48 116 IPR011141 GO:0009058|GO:0016747
Ssu1g2944 138 SUPERFAMILY Thiolase-like 46 109 IPR016039 GO:0016746
Ssu1g2944 138 Pfam Chalcone and stilbene synthases, N-terminal domain 50 115 IPR001099 -
Ssu1g2944 138 PANTHER CHALCONE SYNTHASE 8 48 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2944 Ssu-Chr1 77486912 77487456 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2944 K00660 K13232 bvg:104897651 96.6709