Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2936 ATGGATTCATCACGGGATAATACAAAAGTTGTGCTAGTTGCTTGGTTTCTAGTAATGATCTCAGCCATGTCACAAACAATTCATCCTAGCTGCCAAAATAAATGCGGAAGTGTTAGCATTCCGTACCCATTTGGTACAACTGAGGACTGCTACTTGAACAGCAACTTTTATGTTGCTTGTAACACAAGTCACAAGCCTCCTAAACCATTTCTGTGGGATTTGACCAAAAATATTGAGATCTTAGAGGTGTCATTGAATGGCCATTTGCGGATAAAGTCCCCCGTAGCTTATGTTTGCTATGATGAAAAGGGTGTGCTAGTGGATTCAGGGAATTCATATTTGACTTTGCAAGCATTCCCCTTCTCATATACCCAGAACAAGTTCATTGGAATTGGATGCGACACCCTTTCAACCATTAATGCAACAATTGGGAAAAATTACTCAACTGGAGGATGTTTTTCACTTTGTAGTAGTGTAGAAAGTTCAACCAACGGATCCTGGTTTGGTATTGGTTGCTGCCAAACCTCTATCCCAAAAAACATTTTGGCATATCAAGCTCGTGTCCTGAGTTCAGACTTTAGGCATAGGGATATGAATATTCCTTGTAGCTACTCTCTTTTGGTGGAAGAAGAGTCTTTCAAGTTTTCCACTGATGACTTCATCAAACTGCAGAAGAGAAGAACCGCTCCCACAGTGCTTGATTGGGCTGTTGGGAATCAAACATGCGAAGAAGCAAAGAAGAATTTGACTACTTATGCCTGCCAAGAAAATAGTGTATGTATTGACTCTGACAATGGACCAGGGTACCTCTGCAGATGCTTAGAAGGTTATGTGGGAAATGCATACTTTCATGGTGGATGCCAAGATATTGATGAGTGTGCCAATCCGAGTCTAAATGACTGTTCAGATATTTGCATTAACCTACCTGGGAGCTATAATTGTTCTTGTCCCAACACCAAGAGGTACCAGGGAGATGGCAGAAAAGGAGGAAGTGGCTGCTTCTCAAATCTACAACATGTGGTTAATGAGGTTGTGATAGTCTATTGCTTTGTCCTTTTGCATGCTTTTGAGCCTACAACTTCTGACGTTTTGCAACTCTCTGTCAGTAGATATTATATAGGAAAAATCTAG 1131 0.4094 MDSSRDNTKVVLVAWFLVMISAMSQTIHPSCQNKCGSVSIPYPFGTTEDCYLNSNFYVACNTSHKPPKPFLWDLTKNIEILEVSLNGHLRIKSPVAYVCYDEKGVLVDSGNSYLTLQAFPFSYTQNKFIGIGCDTLSTINATIGKNYSTGGCFSLCSSVESSTNGSWFGIGCCQTSIPKNILAYQARVLSSDFRHRDMNIPCSYSLLVEEESFKFSTDDFIKLQKRRTAPTVLDWAVGNQTCEEAKKNLTTYACQENSVCIDSDNGPGYLCRCLEGYVGNAYFHGGCQDIDECANPSLNDCSDICINLPGSYNCSCPNTKRYQGDGRKGGSGCFSNLQHVVNEVVIVYCFVLLHAFEPTTSDVLQLSVSRYYIGKI 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2936 376 SUPERFAMILY EGF/Laminin 288 326 - -
Ssu1g2936 376 SMART egf_5 292 334 IPR000742 -
Ssu1g2936 376 SMART egf_5 241 288 IPR000742 -
Ssu1g2936 376 PANTHER OSJNBA0016N04.9 PROTEIN 11 297 - -
Ssu1g2936 376 Gene3D Laminin 239 291 - -
Ssu1g2936 376 CDD EGF_CA 289 317 - -
Ssu1g2936 376 ProSitePatterns Calcium-binding EGF-like domain signature. 289 314 IPR018097 GO:0005509
Ssu1g2936 376 Gene3D Laminin 292 329 - -
Ssu1g2936 376 SMART egfca_6 289 334 IPR001881 GO:0005509
Ssu1g2936 376 ProSiteProfiles EGF-like domain profile. 246 284 IPR000742 -
Ssu1g2936 376 PANTHER OSJNBA0016N04.9 PROTEIN 11 297 - -
Ssu1g2936 376 Pfam Wall-associated receptor kinase galacturonan-binding 31 88 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2936 Ssu-Chr1 77219591 77221016 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2936 30 321 Receptor kinase-like Gene Family AT1G21250 36.513 1.92e-50 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2936 - - gmx:100797492 665.611