Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2935 ATGGCTGTCCACTCGAAGcagctgctgctgctgctacTTGTTACAATCCTTATTGCAGCAACTAAAACTCAACTTATTTCAAAGCCAAACTGTCCAACAAAGTGTGGTTCTGTCACCATTCCCTTTCCCTTCGGCATGACCGAGGATTGTTCCTTGGACACCTCATTTCTCGTCACATGCAACCAAACCTCTCCTTCATCACACGCCCCTTTCTTGCCACAAACTAATCTAAGTGTGCTAAACATCTCACTCAACGGCGAATTGCAAATTTCATGGCCAGTCGCCAGCGATTGCTACGCCGACAGAGGCAAACGTGTGAATCAAACGTTTCAGGACCTAAACCTCACAAGGTTTCAAGTCTCTTCCAATCGGAACAAGTTGACCGTGATTGGGTGCGACACGCTTGGACTAGTGGTGGGAATCGACTCGGAGGGAAAGAATTACACCACGGGGTGCGTGTCCCTGTGCAACAGGCTCGAAGACATCGAAGCTAACGGGTCTTGTTCCGGCACCGGTTGTTGCGAGACTTCGATACCGCGGGGGTTGTCGGGTTTCTCCTACGGTTCTGGGAGCGTGTTCAACCACACGAGCGTGATTGACTTCAACCCGTGCGGGTATGCGTTTCTGGTAGAAGATGGGGCCTACAACTTCTCCTCCACGGACCTCGTCAAGTTTGACAAGACCGCGCTTCCTGTGGTGGTGGATTGGGCAGTGGGGAACCAAACATGCCGGGAAGCTCAGAAGGAGTTTTCAAGTTATGCGTGTAAGGCAGAGAACAGTGAATGTTACCATTCAATCCAGGGATCTGGCTACCTCTGCAACTGCTCAAATGGTTTCGAGGGAAACCCTTACCTACTTCATGGTTGTCAAGATGTTGATGAATGCATGGGATCCAACGATTGCGTTGATGAGGCAAAATGCAATAACTTTCCTGGTGGTTATAATTGTTTGTGCCCGGAAGGATATGAAGGAGATGGGAAAAATGATGGATCAAGATGCAGTCCCAAATCTAACACCAATTCCAGAAAAGAGATTATATTGATAATAGCTTTGACCCAAGCAAGAataaggaaagagagagagagagaacgtaTCGTGGTGGCTGTTGTTGGGCGCCTGGTGGTCAGTGGTGGGGATAGTTGTCGACAACGGTCCAATAGGCGTGAGCATATTCGTCGTCGTTCATGTGATTCTCACTCGACTCATACGCGTGGAGGTTGGTTGCCGTCGATGGTGATATCCTCGATGACTGTGACGATGGTGGGTATCGTTAGTGACTATAATGGGTTGCTAATGGGTGTCATTAGAGCGAGaaaagttAGGGATTGTCAAGTCATGTCTTAG 1344 0.4695 MAVHSKQLLLLLLVTILIAATKTQLISKPNCPTKCGSVTIPFPFGMTEDCSLDTSFLVTCNQTSPSSHAPFLPQTNLSVLNISLNGELQISWPVASDCYADRGKRVNQTFQDLNLTRFQVSSNRNKLTVIGCDTLGLVVGIDSEGKNYTTGCVSLCNRLEDIEANGSCSGTGCCETSIPRGLSGFSYGSGSVFNHTSVIDFNPCGYAFLVEDGAYNFSSTDLVKFDKTALPVVVDWAVGNQTCREAQKEFSSYACKAENSECYHSIQGSGYLCNCSNGFEGNPYLLHGCQDVDECMGSNDCVDEAKCNNFPGGYNCLCPEGYEGDGKNDGSRCSPKSNTNSRKEIILIIALTQARIRKERERERIVVAVVGRLVVSGGDSCRQRSNRREHIRRRSCDSHSTHTRGGWLPSMVISSMTVTMVGIVSDYNGLLMGVIRARKVRDCQVMS 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2935 447 SMART egf_5 242 290 IPR000742 -
Ssu1g2935 447 SMART egf_5 294 334 IPR000742 -
Ssu1g2935 447 ProSitePatterns Calcium-binding EGF-like domain signature. 291 316 IPR018097 GO:0005509
Ssu1g2935 447 SUPERFAMILY EGF/Laminin 290 327 - -
Ssu1g2935 447 SMART egfca_6 291 334 IPR001881 GO:0005509
Ssu1g2935 447 Gene3D Laminin 238 333 - -
Ssu1g2935 447 ProSiteProfiles EGF-like domain profile. 291 334 IPR000742 -
Ssu1g2935 447 PANTHER OSJNBA0016N04.9 PROTEIN 8 296 - -
Ssu1g2935 447 Pfam Calcium-binding EGF domain 291 333 IPR001881 GO:0005509
Ssu1g2935 447 CDD EGF_CA 291 325 - -
Ssu1g2935 447 Pfam Wall-associated receptor kinase galacturonan-binding 31 86 IPR025287 GO:0030247
Ssu1g2935 447 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 307 318 IPR000152 -
Ssu1g2935 447 PANTHER OSJNBA0016N04.9 PROTEIN 8 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2935 Ssu-Chr1 77182817 77199522 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2935 11 414 Receptor kinase-like Gene Family AT1G21250 34.917 4.86e-63 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2935 - - gmx:100798027 593.964