Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2931 ATGGACAAACAGCTGCAAATGGCTGTGCATTCAAAGCAACTGCTACTTGTTGCGTTCCTTATTGCAGCAACTAAAAGTCAACCCATATCAAAGCCAGACTGTCAAACAGATTGTGGCAACGTCACCATTCCCTTCCCATTTGGCCTGACCGAGAATTGTTCCTTGAACTCCTCATTTCTTATCACTTGCAACCACACCCTTTCATCACACACCccgtttttgaaaaataatcatttctcCCCAGGTGTGCGTGTGCTAGACATCTCACTGGACGGCGAACTAAACATTTCATTGCCAGTAGCCAGAGATTGCATCTATTATAGTGAATTAGTGGCAACGGGTTATTCGTTCGACCTGAGGCCTTTTCACCTATCATCCACGCGAAACAAGTTAACTGTGGTGGGAGGTAACACGGTTGGAATAGTAGGGCCGACAAATATTTTTGAGCAATATAGTGCATGCGTGTCTTTGTACGATTCTGAGTCAATAACTAACAGGTCATGCTCTGGCATTGGTTGCTGCGAGATTCCAATACCACCAAGGCTATCCaacttctcttatttttcttttcctaatgtCTTCAACAAAAGCATTATTTGGCAAGAAAACCCCTACCCATGTAGTTATGCATTCTTGGTTATAGATGGAGAATACCAGTTCTACACCACTCGTACTGACCTCCTCAACCTCAGCAGCGACACCACGTTTCCTGTGGTTGTGGATTGGGCAGTGGGAAACAACAAGTGCCAAGATGCTAAGAGTGCTTCTAGTTATGCTTGTAAGTCGGACCATAGTGAATGTTACGATGCAAAGGTGGGACAAGGTTACCTTTGTAACTGCTCAAGTGGTTTTCGGGGAAATCCTTACATCTCGGATGGTTGCCGagatgttaATGAATGCGAGGAATCCAACGACTGTTCTGAGGACACAAAGTGCGTCAACTCTCCTCCTGGGAGCTATAGTTGTTCTTGTCCAAAAGGATATGAAGGAGATGGGAAAATTAATGGAACAGGATGCAAATTTGGGACTAACCGCATAATCATAATTGCTTTGAGTGAGTATGTTATTGTTTGCTGGAATTACAAGAAATTATATTCTTGA 1101 0.4178 MDKQLQMAVHSKQLLLVAFLIAATKSQPISKPDCQTDCGNVTIPFPFGLTENCSLNSSFLITCNHTLSSHTPFLKNNHFSPGVRVLDISLDGELNISLPVARDCIYYSELVATGYSFDLRPFHLSSTRNKLTVVGGNTVGIVGPTNIFEQYSACVSLYDSESITNRSCSGIGCCEIPIPPRLSNFSYFSFPNVFNKSIIWQENPYPCSYAFLVIDGEYQFYTTRTDLLNLSSDTTFPVVVDWAVGNNKCQDAKSASSYACKSDHSECYDAKVGQGYLCNCSSGFRGNPYISDGCRDVNECEESNDCSEDTKCVNSPPGSYSCSCPKGYEGDGKINGTGCKFGTNRIIIIALSEYVIVCWNYKKLYS 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2931 366 PANTHER OSJNBA0016N04.9 PROTEIN 7 303 - -
Ssu1g2931 366 SMART egf_5 299 340 IPR000742 -
Ssu1g2931 366 SMART egf_5 248 295 IPR000742 -
Ssu1g2931 366 SMART egfca_6 296 340 IPR001881 GO:0005509
Ssu1g2931 366 Gene3D Laminin 245 339 - -
Ssu1g2931 366 Pfam Wall-associated receptor kinase galacturonan-binding 34 93 IPR025287 GO:0030247
Ssu1g2931 366 CDD EGF_CA 296 331 - -
Ssu1g2931 366 PANTHER OSJNBA0016N04.9 PROTEIN 7 303 - -
Ssu1g2931 366 Pfam Calcium-binding EGF domain 296 332 IPR001881 GO:0005509
Ssu1g2931 366 ProSiteProfiles EGF-like domain profile. 296 331 IPR000742 -
Ssu1g2931 366 SUPERFAMILY EGF/Laminin 294 332 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2931 Ssu-Chr1 76949600 76950889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2931 7 327 Receptor kinase-like Gene Family AT1G21230 35.952 6.58e-48 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2931 - - gsj:114410917 372.089