Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2924 ATGGGTGTGAGTGCCGCTTCTATACTGAACCAACTCCTCCGCAAGCAAAACCTGAAGCCACACCCACAGCCACAGTCACAATCCGCCACCAACGCAGTGATCAAAACAATCCTCACTTACCTCAAAGCGGGTCGCATCCGAAAAGCCACTTCCATTCTCTTCGGCTTCCCAAAACCCTTCCCTTACCCTCTCTACGCCCTCTTCTTCCGCCTCTGTTCCTCCCACCGCGCCATTGTCGAGGCCCGCAAGGTCGAGTCCCACTTGCTCACCTTCTCCCCCAACCCTCCCACCTTCCTCCTTAACCGCGCCATCGAGTCCTACGCAAAATGCAACTGTCTCCGCGACGCCCGAGAACTGTTCGACGAAATGCCCCAACGAGATGGCGGCTCTTGGAACGCCCTCATCACCGCTCACTCCCAATTGGGTTTCCCCAGCGAGGtcttttccttgttcttgtctATGAATAGGTCCGGTGTTTGTCCCAGTGAGGTTACTTTTGCTAGCGTTCTTGCCTCTTGTGCTGCTGCTTCTGAGCTTCTTCTTTCCAAGCAGGTTCATGGGCTGGTCACAAAGTTTGGATTCTGTGGCAATGTGATCCTCGGGTGTTCCCTTGTTGATGTGTATGCCAAGTGTGGGGTTATGGTTGAGTCTCGAAAGATGTTTCATGAGATTCCGCAGCCTAATGCTGTCACGTGGAATGTGATTGTGAGGCGGTATCTTGATGCTGGTGATGCGAAGGAAGCGGTTTTCATGTTCTCGCGGATGTTTTCTGCGGCAGTTAGGCCAATGAATTTTACATTCTCTAATGCTCTTGTTGCTTGTTCCAGTGTGTGTGCGCTCCAGGAGGGAATGCAGATTCATGGGGTGGTTGTGAAGTTGGGTCTCCACGAGGATAATGTTGTTTCGAGCTCGCTTGTGAACATGTATGTCAAGTGTGGTAGGCTGGAGGATGGTTCTTGGGTTTTTGATCAGCTTGGTTATAGAGATTTGGTGTGTTGGACTTCCATTGTGTCAGGGTATGCAATGAGTGGGAAAACTTTGGAGGCAAGAAAGCTTTTTGATGAGATGCCTGAACGGAATGTGATCTCTTGGAATGCAATGTTGGCGGGATATACCCAGTGCTTTGAATGGTCTGAGGCGTTAGATTTTGTGTATCTCATGCTTGATACAATTAAAGATGTGGATCATGTTACTCTTGGTTTGATGTTAAATGTTTGGGCGGGTATTTCAGATCATGAAATGGGGAAACAGGTTCATGGATATATCTATAGACATGGCTTCCACTCGGACCTTAGGCTCAGTAATGCCCTTCTTGACATGTATGGTAAATGTGGGAACTTGAACAGCGCCAGGGTTTGGTTTAACCAGATGAGTAATTGGCGTGACAGGGTTTCTTGGAATGCTTTGTTGGCTAGCTATGGTCATCATCAATTAAGCGAACAAGCGTTAACAATGTTTTCAGAGATGCAGTGGGAGACAAAACCAACCAAGTATACGTTTGGAACCCTTTTGTTAGCATGTGCAAATACCTTTGCTCTTTACCTTGGCAAACAAATTCATGGATTCATCATTAGACATGGATTTCAGATAGATGCTATAGTCCGAACTGCTTTGGTTTACATGTACTGTAAATGCCGTTGTCTTGAGTATGCTATTGAGGTTCTGAAAGGGGCAGTTTCCAGGGATGTGATAATTTGGAATACCATAATTTTGGGATGTTGTCACAATCATAGGGGTAAAGAAGCGCTTGAACTTTTTGTGACAATGGAAGCAGAAGGTGTCAAGCCAGACCATGTGACCTTTAAGGGCATTCTGCTTGCTTGCATTGAAGAAGGCCTTGTTGAGTTTGGCACCGAATGCTTTAAGTCAATGAGCAGCGAATACCATGTCCTGCCTTGGCTGGAGCATTATGACTGCATGATCGAACTCTACAGTCGGCATGGATATATGGATGAGCTCGAGAATTTTATGAGGACAATGACAATTGAGCCCACACTTCCAATGTTGAAAAGAGTTCTTGATACTTGTCAGAAAAATGAGTGCCCAAGATTGGGAGAATGGATTacagaaaaaattaatgaattcaaacattaa 2094 0.4565 MGVSAASILNQLLRKQNLKPHPQPQSQSATNAVIKTILTYLKAGRIRKATSILFGFPKPFPYPLYALFFRLCSSHRAIVEARKVESHLLTFSPNPPTFLLNRAIESYAKCNCLRDARELFDEMPQRDGGSWNALITAHSQLGFPSEVFSLFLSMNRSGVCPSEVTFASVLASCAAASELLLSKQVHGLVTKFGFCGNVILGCSLVDVYAKCGVMVESRKMFHEIPQPNAVTWNVIVRRYLDAGDAKEAVFMFSRMFSAAVRPMNFTFSNALVACSSVCALQEGMQIHGVVVKLGLHEDNVVSSSLVNMYVKCGRLEDGSWVFDQLGYRDLVCWTSIVSGYAMSGKTLEARKLFDEMPERNVISWNAMLAGYTQCFEWSEALDFVYLMLDTIKDVDHVTLGLMLNVWAGISDHEMGKQVHGYIYRHGFHSDLRLSNALLDMYGKCGNLNSARVWFNQMSNWRDRVSWNALLASYGHHQLSEQALTMFSEMQWETKPTKYTFGTLLLACANTFALYLGKQIHGFIIRHGFQIDAIVRTALVYMYCKCRCLEYAIEVLKGAVSRDVIIWNTIILGCCHNHRGKEALELFVTMEAEGVKPDHVTFKGILLACIEEGLVEFGTECFKSMSSEYHVLPWLEHYDCMIELYSRHGYMDELENFMRTMTIEPTLPMLKRVLDTCQKNECPRLGEWITEKINEFKH 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2924 697 Pfam PPR repeat family 462 508 IPR002885 -
Ssu1g2924 697 Pfam PPR repeat family 561 608 IPR002885 -
Ssu1g2924 697 Pfam PPR repeat 636 660 IPR002885 -
Ssu1g2924 697 Pfam PPR repeat 130 159 IPR002885 -
Ssu1g2924 697 Pfam PPR repeat 362 388 IPR002885 -
Ssu1g2924 697 Pfam PPR repeat 303 325 IPR002885 -
Ssu1g2924 697 Pfam PPR repeat 103 126 IPR002885 -
Ssu1g2924 697 Pfam PPR repeat 435 458 IPR002885 -
Ssu1g2924 697 Pfam PPR repeat 230 256 IPR002885 -
Ssu1g2924 697 Pfam PPR repeat 331 361 IPR002885 -
Ssu1g2924 697 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 503 570 - -
Ssu1g2924 697 Gene3D Tetratricopeptide repeat domain 612 697 IPR011990 GO:0005515
Ssu1g2924 697 Gene3D Tetratricopeptide repeat domain 183 325 IPR011990 GO:0005515
Ssu1g2924 697 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 4 484 - -
Ssu1g2924 697 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 571 695 - -
Ssu1g2924 697 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 4 484 - -
Ssu1g2924 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 329 363 IPR002885 -
Ssu1g2924 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 562 596 IPR002885 -
Ssu1g2924 697 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 571 695 - -
Ssu1g2924 697 Gene3D Tetratricopeptide repeat domain 326 413 IPR011990 GO:0005515
Ssu1g2924 697 Gene3D Tetratricopeptide repeat domain 61 182 IPR011990 GO:0005515
Ssu1g2924 697 Gene3D Tetratricopeptide repeat domain 414 513 IPR011990 GO:0005515
Ssu1g2924 697 Gene3D Tetratricopeptide repeat domain 514 611 IPR011990 GO:0005515
Ssu1g2924 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 262 IPR002885 -
Ssu1g2924 697 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 503 570 - -
Ssu1g2924 697 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 127 161 IPR002885 -
Ssu1g2924 697 TIGRFAM PPR: pentatricopeptide repeat domain 331 361 IPR002885 -
Ssu1g2924 697 TIGRFAM PPR: pentatricopeptide repeat domain 565 597 IPR002885 -
Ssu1g2924 697 TIGRFAM PPR: pentatricopeptide repeat domain 130 163 IPR002885 -
Ssu1g2924 697 TIGRFAM PPR: pentatricopeptide repeat domain 464 490 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2924 Ssu-Chr1 76778940 76781033 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2924 18 695 Glycoside Hydrolase AT3G49170 28.116 1.64e-85 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2924 - - gmx:100775626 1268.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2924 1 76778940 76781033 Ssu1g2924 1 76778940 76781033 ECH