Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2923 ATGGAACTGCGTGGCCTGGCGCGCACGCTTCAATCCTGGTCCTCGATTCGTGAAGGGAGGCAACTCCACGTGGCATTCCTTAAAACCGGGATTCTAAACTCCTCCCTCCCCGTGGCAAACCGGCTTCTCCAGCTATACTCTCGCCGCGGCCATCTCCGAGATGCGTCCCACTTGTTCGACGAAATGCCCCACACAAACTCTTTCTCCTGGAACACCCTCGTCCAAGCCCACCTCAACTCAGGCCACACCCACACGTCCCTCCACTTGTTCAATGCCATGCCTCACAAGACACTCTTCTCATGGAACATGGTCGTTTCCGCGTTTGCCAAATCCGGACACCTCCAACTGGCCCACTCTCTCTTCGATGCCATGCCCTCAAAGAACCACCTCGTCTGGAATTCCCTCATTCACGGTTATTCCCGACACGGGCATCCCGGGAAAGCGCTGTTCCTCTTCAAGAGCATGAACTCAGACCCTCAACAAATGATGTTCCGTGATGCCTTTGTGCTGGCCACTGCTCTTGGCGCCTGTGCTGACTTGTTGGCTCTCAGCTGCGGGAAACAAGTCCACGCGCGTGTTTTTGTTGATGGTCTCGGGTTGGAGCTTGACAGGGTCTTGTGCAGCTCGCTGATTAACTTGTACGGGAAGTGTGGTGATTTGGATAGTGCTGCTCGTATTGCGAGTTCTGTGAGGGAAGTGGATGAGTTCTCTTTGTCAGCTTTGGTATCTGGTTATGCAAATGCCGGTAGAATGAGGGAGGCCAGAAGGGTTTTTGATAGTAAGGTTGATCCCTGTGCTGTGCTGTGGAATTCAATTATTTCGGGTTATGTGTCCAACGGTGGGGAGATGGAAGCAGTGACGCTTTTCGGTACAATGCTTAGGAATGGTGTTCGGGGAGACGTCTCTACTGTTGCTAATATTTTGAGTGCGGGCGGTGGTTTGCTCGTTGTTGAGCTTATTAAGCAAATGCATGCGTATGCTTGTAAATCTGGGGTGACTCATGATGTAGTGATTGCCAGTGCTCTGCTTGATGCATACTCCAAATGTCAAATCCCTTGTGAAGCTTGCAAGTTGTTTAGTGAGCTCAAAGCTTATGATACCATTTTGCTTAATACTATGATCACTGTGTATTCTAATTGTGGAAGGATTGAAGATGCAAAATGGGTTTTTAACTCGATGCCTAgtaaaacattaatttcatGGAATTCAATACTAGTTGGCCTAACGCAGAATGCATGTCCAAGTGAAGCGTTGGATCTTTTTTGTCAGATGAATAGGATGGACTTAAAAATGGACAAGTTTAGCTTTGCAAGTGTTATCAGTGCTTGTGCCAGCAAATCATCCCTTGAACTTGGTGAGCAGGTATTTGGTAAAGCTATTACCATTGGGCTTGAACCTGACCAGATAATTTCTACCTCCcttgttgatttttattgtaaatgtgGCTTTGTTGAGATAGGGCGTAAAGTTTTTGATGGAATGATAAAAACTGATGAAGTCTCGTGGAACACAATGTTGATGGGGTATGCCACAAATGGATTTGGTATTGAAGCACTGACACTCTTTAGTGAAATGAGGTATGGTGGTGTCAGACCTTCTGCCATTACTTTTACTGCAGTTCTTTCAGCCTGTGATCATAGCGGTCTGGTTGAAGAAGGAAGAAATTTGTTCCATACAATGAAACATACCTATAATATAAGTCCACGGATTGAACATTACTCTTGCATGGTTGACCTTTTTGCCCGCTCTGGATGCTTCGAGGAAGCAATGGATCTTATTGAAGAGATGCCTTTTCAGGCTGATGCAAACGTGTGGTTGTCAGTATTGAGAGGCTGCATAGCTCATGGAAATAAGACTATTGGCAAGATGGCTGCAGAGCAAGTCATTCGGCTTGATCCTGAAAATGCGGGTGCCTATATACAATTATCTAACATACTTGCATCTTCTGGGGACTGGGAAGGGTCAGCACTAGTAAGAGAAATGATGAGAGATATGCATGTTCAAAAGATTCCAGGTTGCAGTTGGGCAGATTGTTGA 2037 0.4585 MELRGLARTLQSWSSIREGRQLHVAFLKTGILNSSLPVANRLLQLYSRRGHLRDASHLFDEMPHTNSFSWNTLVQAHLNSGHTHTSLHLFNAMPHKTLFSWNMVVSAFAKSGHLQLAHSLFDAMPSKNHLVWNSLIHGYSRHGHPGKALFLFKSMNSDPQQMMFRDAFVLATALGACADLLALSCGKQVHARVFVDGLGLELDRVLCSSLINLYGKCGDLDSAARIASSVREVDEFSLSALVSGYANAGRMREARRVFDSKVDPCAVLWNSIISGYVSNGGEMEAVTLFGTMLRNGVRGDVSTVANILSAGGGLLVVELIKQMHAYACKSGVTHDVVIASALLDAYSKCQIPCEACKLFSELKAYDTILLNTMITVYSNCGRIEDAKWVFNSMPSKTLISWNSILVGLTQNACPSEALDLFCQMNRMDLKMDKFSFASVISACASKSSLELGEQVFGKAITIGLEPDQIISTSLVDFYCKCGFVEIGRKVFDGMIKTDEVSWNTMLMGYATNGFGIEALTLFSEMRYGGVRPSAITFTAVLSACDHSGLVEEGRNLFHTMKHTYNISPRIEHYSCMVDLFARSGCFEEAMDLIEEMPFQADANVWLSVLRGCIAHGNKTIGKMAAEQVIRLDPENAGAYIQLSNILASSGDWEGSALVREMMRDMHVQKIPGCSWADC 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2923 678 Pfam PPR repeat 206 224 IPR002885 -
Ssu1g2923 678 Pfam PPR repeat 237 259 IPR002885 -
Ssu1g2923 678 Pfam PPR repeat 68 94 IPR002885 -
Ssu1g2923 678 Pfam PPR repeat 40 62 IPR002885 -
Ssu1g2923 678 Pfam PPR repeat 99 128 IPR002885 -
Ssu1g2923 678 Pfam PPR repeat 572 596 IPR002885 -
Ssu1g2923 678 Pfam PPR repeat 472 496 IPR002885 -
Ssu1g2923 678 Pfam PPR repeat 371 396 IPR002885 -
Ssu1g2923 678 Pfam PPR repeat 399 427 IPR002885 -
Ssu1g2923 678 Pfam PPR repeat 267 297 IPR002885 -
Ssu1g2923 678 Pfam PPR repeat 131 156 IPR002885 -
Ssu1g2923 678 PANTHER OS07G0578800 PROTEIN-RELATED 7 98 IPR045215 GO:0003723|GO:0009451
Ssu1g2923 678 Gene3D Tetratricopeptide repeat domain 200 312 IPR011990 GO:0005515
Ssu1g2923 678 Gene3D Tetratricopeptide repeat domain 313 470 IPR011990 GO:0005515
Ssu1g2923 678 Pfam E motif 615 675 IPR046848 -
Ssu1g2923 678 PANTHER OS07G0578800 PROTEIN-RELATED 107 155 IPR045215 GO:0003723|GO:0009451
Ssu1g2923 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Ssu1g2923 678 PANTHER OS03G0849700 PROTEIN 7 98 - -
Ssu1g2923 678 PANTHER OS03G0849700 PROTEIN 164 678 - -
Ssu1g2923 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 265 299 IPR002885 -
Ssu1g2923 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 498 532 IPR002885 -
Ssu1g2923 678 PANTHER OS03G0849700 PROTEIN 107 155 - -
Ssu1g2923 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 131 IPR002885 -
Ssu1g2923 678 Pfam PPR repeat family 498 544 IPR002885 -
Ssu1g2923 678 Gene3D Tetratricopeptide repeat domain 515 676 IPR011990 GO:0005515
Ssu1g2923 678 Gene3D Tetratricopeptide repeat domain 3 193 IPR011990 GO:0005515
Ssu1g2923 678 PANTHER OS07G0578800 PROTEIN-RELATED 164 678 IPR045215 GO:0003723|GO:0009451
Ssu1g2923 678 TIGRFAM PPR: pentatricopeptide repeat domain 500 533 IPR002885 -
Ssu1g2923 678 TIGRFAM PPR: pentatricopeptide repeat domain 573 596 IPR002885 -
Ssu1g2923 678 TIGRFAM PPR: pentatricopeptide repeat domain 99 129 IPR002885 -
Ssu1g2923 678 TIGRFAM PPR: pentatricopeptide repeat domain 399 432 IPR002885 -
Ssu1g2923 678 TIGRFAM PPR: pentatricopeptide repeat domain 267 300 IPR002885 -
Ssu1g2923 678 TIGRFAM PPR: pentatricopeptide repeat domain 131 155 IPR002885 -
Ssu1g2923 678 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 432 466 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2923 Ssu-Chr1 76774947 76776983 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2923 16 677 Glycoside Hydrolase AT3G49170 29.379 1.22e-99 323
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2923 - - gmx:100790756 1226.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2923 1 76774947 76776983 Ssu1g2923 1 76774947 76776983 ECH