Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2921 ATGATTTCAAGCTATGCTAGGCATGATTTAGGGGAAGATGCTTTGCAACTTTTTGTGCTGACCTTGAGGAAGAATATCAGACCTACGGAATACACGGTTAGCTCTCTTCTGAGTTCGGTTTCGATTTTCTTACCATTGGAAGTGGGTAATCAAATCCATTCTTTGGTTCCTAAATTGGGTTTTGAGTCAGATGCAGTTGTTGCCAATTCACTTGTTGATATGTATGCTAAATTTGGGTTTATTGATGACGCCTTGAATATCttcaatgaaatgaaaataaaagatttggtATCATGGAACACTATAATGATGGGACTGACTTACAATGGTAAAGTGTCTTTGACCATGGACCTCTTCAGGGAATTGTTGACCAGAGAAGGCATGCTACCAGATCGAATAACACTTACTGCAGTTCTTCTAGCATGCAACTATGGGAGGTTGGTTGATGAAGGAATTGAAATATTTTCCTCAATGGAGACGGAATTCGTAGTAAAACCAGGAGAAGAACATTATGTGTGTGTTGTGGAGATATTGAGTAAAGCTGGTAAGCTCAAAGAAGCCATTGATATCATAGAAACAATGCCGTATAGAACTAGCTCTGAAATTTGGAGGTCAATTCTTTCTGCTTGTGCAATTTATGGAGACTTGCAAGTTATTGAAGGAGTtgcaaagaaaataatggataGGGAATCACAGACATCCTTACCTCACTTGGTGTTGGCTCAAGCATATCAGATGAGGGGTAGATGGGAGACCATGGTTCGAATGAGGAAGGCTGTGGAAAATAGAGGTACTAAAGAGTTCGTTGGACACAGTTGgattggaataaaaaataatgtgtacaCTTTTACGTCAAATCAATTGCAGCATTATGGTGGCAAGGATCTTTATCTGCTGTTGAATTTACTGGTCTGGGAGATGGAGAGTGAAGGTTATGTCTAA 942 0.3737 MISSYARHDLGEDALQLFVLTLRKNIRPTEYTVSSLLSSVSIFLPLEVGNQIHSLVPKLGFESDAVVANSLVDMYAKFGFIDDALNIFNEMKIKDLVSWNTIMMGLTYNGKVSLTMDLFRELLTREGMLPDRITLTAVLLACNYGRLVDEGIEIFSSMETEFVVKPGEEHYVCVVEILSKAGKLKEAIDIIETMPYRTSSEIWRSILSACAIYGDLQVIEGVAKKIMDRESQTSLPHLVLAQAYQMRGRWETMVRMRKAVENRGTKEFVGHSWIGIKNNVYTFTSNQLQHYGGKDLYLLLNLLVWEMESEGYV 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2921 313 Gene3D Tetratricopeptide repeat domain 1 143 IPR011990 GO:0005515
Ssu1g2921 313 PANTHER OS07G0578800 PROTEIN-RELATED 1 313 IPR045215 GO:0003723|GO:0009451
Ssu1g2921 313 Gene3D Tetratricopeptide repeat domain 144 288 IPR011990 GO:0005515
Ssu1g2921 313 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 64 98 IPR002885 -
Ssu1g2921 313 PANTHER OS03G0435200 PROTEIN 1 313 - -
Ssu1g2921 313 Pfam PPR repeat 171 194 IPR002885 -
Ssu1g2921 313 Pfam PPR repeat 1 23 IPR002885 -
Ssu1g2921 313 Pfam PPR repeat 67 94 IPR002885 -
Ssu1g2921 313 Pfam PPR repeat 97 124 IPR002885 -
Ssu1g2921 313 TIGRFAM PPR: pentatricopeptide repeat domain 97 131 IPR002885 -
Ssu1g2921 313 TIGRFAM PPR: pentatricopeptide repeat domain 68 95 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2921 Ssu-Chr1 76770776 76771717 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2921 12 313 Glycoside Hydrolase AT3G49170 31.788 4.49e-55 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2921 - - gmx:102663822 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2921 1 76770776 76771717 Ssu1g2921 1 76770776 76771717 ECH