Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2918 ATGGCATCCTGGTTATTGGGAAGGACTAGGATCCTAACTCATCAGCCACACCTTCACAAAAACCTGGCCTTCTTGTTAGGACCAGTTCTCAACCATAgctcttcttcctcctttcgATTAACTGAGCCATTTAAGTGCCCCGATGCATCAAGGGGTAACAACTCAGTGAACTCACCTACCCTTCTCTGCTTCTCGCGTCATGAATCCACCAAAGCTGAGGCACAATTGGAATTGGAGCACGATGTTAGCGAGGATGACCGTAATCagGTCATGGATTTTCCTGGAGGGAAAGTTGGATTTACTTCTGAAATGAGATTCATTTCTGCGTCTGCTCAGAAAAGGGTGCCCTGTTATCGAGTTCTTGATGACAATGGTGAGCTCGTTAAATACAGCAACTATGTACAGGTTAGCAAGGAAATGGCTGTGAAGATGTATTCTGACATGGTCACTCTTCAAACTATGGACAGCATCTTCTATGAAGTGCAGAGGCAAGGTAGAATTTCCTTCTACCTCACCTCAATGGGAGAAGAAGCAGTTAACATTGCATCCGCAGCTGCACTTGCTCCTGATGATATCATATTGCCTCAGTACCGGGAGCCTGGAGTTTTATTGTGGCGTGGTTTTACACTGCAACAATTTGTCCATCAGTGCTTTGGAAACACACATGATTTTGGGAAAGGCAGACAGATGCCTATACATTATGGGTCTAACAAGCACAATTACTTCACAGTGTCATCCCCCATTGCAACACAACTTCCTCAAGCTGTAGGCGCTGCTTATTCCCTTAAAATGGATGGGAAAAGTGCATGTGCAGTCACTTATTGTGGAGATGGTGGCACCAGTGAGGGAGATTTTCATGCAGCTATGAATTTTGCAGCAGTAATGGAGGCCCCTATTGTTTTTATCTGTCGCAACAATGGATGGGCCATCAGTACACCTGTAGAAGAACAATTTCGAAGTGATGGTATTGTAGTCAAAGGTAAAGCTTATGGCATATCGGGTATCAGAGTAGATGGAAATGATGCTCTTGCTGTTTATAGTGCAGTTCACACTGCCAGAGAAATAtctataagagaaaaaaggccAGTTTTAATTGAGGCTCTCACTTATAGAGTAGGACATCACTCTACATCTGATGATTCAACTAAGTACCGGGCAATTGATGAGATTGAATATTGGAAGACGGCAAGGAATCCTGTGAATAGATTCAAAAGATGGGTAGAAGGGAATGGTTGGTGGAGTGACAAGGATGAATTGGAGCTTAGAAGCAGTATCAGGAAGcagCTAATGCATGCGATTCAAGTGGCAGAGAAAGCACAAAAACCTCCACTTGAGGACTTGTTTAATGATGTATATGACCAAATACCATCAAACCTTCAGGAGCAAGAGAGACTACTTAGAAAAACCATCGAGAAACATCCCAAAGACTACCCTTCCGATGTTCCTTTGTAG 1452 0.4215 MASWLLGRTRILTHQPHLHKNLAFLLGPVLNHSSSSSFRLTEPFKCPDASRGNNSVNSPTLLCFSRHESTKAEAQLELEHDVSEDDRNQVMDFPGGKVGFTSEMRFISASAQKRVPCYRVLDDNGELVKYSNYVQVSKEMAVKMYSDMVTLQTMDSIFYEVQRQGRISFYLTSMGEEAVNIASAAALAPDDIILPQYREPGVLLWRGFTLQQFVHQCFGNTHDFGKGRQMPIHYGSNKHNYFTVSSPIATQLPQAVGAAYSLKMDGKSACAVTYCGDGGTSEGDFHAAMNFAAVMEAPIVFICRNNGWAISTPVEEQFRSDGIVVKGKAYGISGIRVDGNDALAVYSAVHTAREISIREKRPVLIEALTYRVGHHSTSDDSTKYRAIDEIEYWKTARNPVNRFKRWVEGNGWWSDKDELELRSSIRKQLMHAIQVAEKAQKPPLEDLFNDVYDQIPSNLQEQERLLRKTIEKHPKDYPSDVPL 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2918 483 Pfam Dehydrogenase E1 component 148 443 IPR001017 GO:0016624
Ssu1g2918 483 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL 51 483 - -
Ssu1g2918 483 CDD TPP_E1_PDC_ADC_BCADC 144 436 - -
Ssu1g2918 483 Gene3D - 86 481 - -
Ssu1g2918 483 PANTHER 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA 1, MITOCHONDRIAL-LIKE 51 483 - -
Ssu1g2918 483 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 115 478 IPR029061 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2918 Ssu-Chr1 76724398 76733846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2918 50 321 Acyl Lipid Metabolism Gene Families AT5G09300 69.963 1.09e-139 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2918 K00166 - gmx:100796766 867.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2918 1 76724398 76733846 Ssu1g2918 1 76724398 76733846 ECH