LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu1g2915	ATGGTTGGCAAGGATAACCTGAGGGATGAGGACTTGAACTTGTGCTTTGAGAAGCTTATGATGGTGACTGGGAGCGGGAACAGTGAGAAAGGGGTGAACATGATGAAGGTTGGGGTGATCACCGAGTGGAAGGATATTCCTGTGGAGCTTTTGGTGCAAATTCTGTCCCTTGTGGATGATCAGACGGTGATCACAGCTTCTGCGGTTTGTCGTGGCTGGAGAGATGCTATTTACTTTGGCCTTGCTCGTTTATCACTCTCATGGTGTAGCAAGAACATGAATAACTTGGTCCTATCTCTTGTTcctaaattcacaaaattgcAAACTCTAATCCTTCGTCAAGACAAGCCTCAACTGGAGGATAATGCGGTTGAGACTATTGCAAAATGCTGTCATGAACTGCAGATCCTGGACCTCAGCAAAAGTTTCAAGCTAACTGATCGTTCACTCTATGCTGTTGCCCTTGGTTGTTGCAACCTTACAACACTCAACATCAGTGGGTGTTCAGCATTTAGCGACAAATCTCTGGCTTACCTTGCCAGTTTCTGCAGAAAACTGAAAGTTCTAAATCTCTGTGGATGTGTTAGAACTGCATCTGATACTGCATTACAGGCTATTGGACAATACTGCAATCAGTTACAATCTTTGAACCTTGGATGGTGTGATAATGTTGGTGATGTTGGAGTGACTAGTTTAGCATGCGGGTGTCCCAATCTCAGGATAGTTGACTTGTGTGGCTGTGTCCGTATAACAGATGACAGTGTGATTGCTTTGGCGAGCAGATGCCCCCATCTGAGGTCCCTTGGACTGTACTACTGCAAGAACATCACAGACAGAGCAATGTATTCCCTGGCACAGAGCAAGGTGAATAACAGGATGTGGGGATCTGTGAAAGGAGGAAATGATGAGGATGGGTTAAGGACTTTGAACATTAGCCAATGCACTGCACTCACCCCATCTGCTGTTCAAGCGGTTTGTGACTCATTCCCTGCTCTCCACACATGCTCAGGGAGGCATTCACTCATCATGAGTGGCTGCCTCAGCTTGACATCTGTGCATTGTGCCTGTGCTGTCCATGCACACCGTGCATTCAGCACTTTCCCTCATCCTGCTCATTAA	1119	0.4584	MVGKDNLRDEDLNLCFEKLMMVTGSGNSEKGVNMMKVGVITEWKDIPVELLVQILSLVDDQTVITASAVCRGWRDAIYFGLARLSLSWCSKNMNNLVLSLVPKFTKLQTLILRQDKPQLEDNAVETIAKCCHELQILDLSKSFKLTDRSLYAVALGCCNLTTLNISGCSAFSDKSLAYLASFCRKLKVLNLCGCVRTASDTALQAIGQYCNQLQSLNLGWCDNVGDVGVTSLACGCPNLRIVDLCGCVRITDDSVIALASRCPHLRSLGLYYCKNITDRAMYSLAQSKVNNRMWGSVKGGNDEDGLRTLNISQCTALTPSAVQAVCDSFPALHTCSGRHSLIMSGCLSLTSVHCACAVHAHRAFSTFPHPAH	372

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu1g2915	372	Pfam	F-box-like	44	77	IPR001810	GO:0005515
	Ssu1g2915	372	SUPERFAMILY	RNI-like	80	352	-	-
	Ssu1g2915	372	PANTHER	UNCHARACTERIZED	1	354	-	-
	Ssu1g2915	372	Pfam	Leucine Rich repeat	210	233	IPR001611	GO:0005515
	Ssu1g2915	372	Pfam	Leucine Rich repeat	262	285	IPR001611	GO:0005515
	Ssu1g2915	372	Pfam	Leucine Rich repeat	236	259	IPR001611	GO:0005515
	Ssu1g2915	372	Pfam	Leucine Rich repeat	157	180	IPR001611	GO:0005515
	Ssu1g2915	372	PANTHER	F-BOX SKP2A-LIKE PROTEIN	1	354	-	-
	Ssu1g2915	372	Gene3D	-	42	79	-	-
	Ssu1g2915	372	SMART	LRR_CC_2	210	235	IPR006553	-
	Ssu1g2915	372	SMART	LRR_CC_2	104	130	IPR006553	-
	Ssu1g2915	372	SMART	LRR_CC_2	236	261	IPR006553	-
	Ssu1g2915	372	SMART	LRR_CC_2	157	182	IPR006553	-
	Ssu1g2915	372	SMART	LRR_CC_2	131	156	IPR006553	-
	Ssu1g2915	372	SMART	LRR_CC_2	183	209	IPR006553	-
	Ssu1g2915	372	SMART	LRR_CC_2	262	287	IPR006553	-
	Ssu1g2915	372	SMART	LRR_CC_2	303	328	IPR006553	-
	Ssu1g2915	372	Gene3D	Ribonuclease Inhibitor	80	363	IPR032675	-
	Ssu1g2915	372	SUPERFAMILY	F-box domain	42	78	IPR036047	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu1g2915	Ssu-Chr1	76640817	76643638	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu1g2915	K03875		-	gmx:100818928	696.812

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu1g2915	1	76640817	76643638	Ssu1g2915	1	76640817	76643638	ECH