Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2905 ATGGCCCTGGAGAACTGTTTACGAGTAACCACAGTAGGCACAGCCACCCCCCAATGCCTTTCTCCATTCTTTTCAACTTCAAGGGACAAGCTTGTTTTCCCAATTCAGAGAGGTTTCAAGAAATCCATGCTAAACTCAACAGTGTCATACCCATCTCTTTATTCAACCGGTGCTACCTACAGAAAATCCCGTTTTGTTTGCAATGCTCGTGAAGCAGTAAATGAAGTTAAAGTAGTGACTGACTCAAGCTGGAACAACCTTGTCATTGGAAGTGAGACCCCCGTGCTGGTAGAGTTTTGGGCTCCATGGTGTGGTCCGTGCAGGATGATAGCGCCTGTTATCGATGAGTTGGCAAAAGAATATGCTGGAAAAATTGCATGCTACAAGCTTAACACGGATGATTCTCCAAACATAGCAACACAGTACGGCATCAGAAGCATACCAACAGTTCTGTTCTTCAAGAAcggagagaaaaaagaaagcataATTGGTGCAGTTCCCAAGTCTACTCTGTCCGCAACAGTGGaaaaatatgttgatttataa 546 0.4194 MALENCLRVTTVGTATPQCLSPFFSTSRDKLVFPIQRGFKKSMLNSTVSYPSLYSTGATYRKSRFVCNAREAVNEVKVVTDSSWNNLVIGSETPVLVEFWAPWCGPCRMIAPVIDELAKEYAGKIACYKLNTDDSPNIATQYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSATVEKYVDL 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2905 181 TIGRFAM thioredoxin: thioredoxin 80 178 IPR005746 GO:0015035
Ssu1g2905 181 Pfam Thioredoxin 76 176 IPR013766 -
Ssu1g2905 181 PANTHER THIOREDOXIN M-TYPE PROTEIN 24 178 - -
Ssu1g2905 181 SUPERFAMILY Thioredoxin-like 64 180 IPR036249 -
Ssu1g2905 181 PRINTS Thioredoxin family signature 143 154 - -
Ssu1g2905 181 PRINTS Thioredoxin family signature 95 103 - -
Ssu1g2905 181 PRINTS Thioredoxin family signature 103 112 - -
Ssu1g2905 181 ProSitePatterns Thioredoxin family active site. 96 114 IPR017937 -
Ssu1g2905 181 Gene3D Glutaredoxin 76 180 - -
Ssu1g2905 181 ProSiteProfiles Thioredoxin domain profile. 67 180 IPR013766 -
Ssu1g2905 181 CDD TRX_family 88 176 - -
Ssu1g2905 181 PANTHER GEO12009P1 24 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2905 Ssu-Chr1 76315062 76316569 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2905 K03671 - gmx:100500292 343.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2905 1 76315062 76316569 Ssu1g2905 1 76315062 76316569 ECH